Query= MSMg01no137_n15.b1 MSMg01no137_n15.b1 CHROMAT_FILE:
MSMg01no137_n15.b1 PHD_FILE: MSMg01no137_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:41 2005
(652 letters)
>mm_chr16_3761812_3762862
Length = 1051
Score = 1224 bits (633), Expect = 0.0
Identities = 645/649 (99%), Gaps = 1/649 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaagtactcatccactctagtatacaatagaaaatgaactttttttttcctgat 63
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 851 ggaattcaagtactcaaggactctagtatacaatagaaaatgaac-ttttttttcctgat 793
Query: 64 aggaaatgaaatcttccacctacccttttgccccaataaatgattgttctcattaaaccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aggaaatgaaatcttccacctacccttttgccccaataaatgattgttctcattaaaccc 733
Query: 124 ccatggttgcctgcattaaacctctagggtatctcatgcctctagtggccaactcagatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ccatggttgcctgcattaaacctctagggtatctcatgcctctagtggccaactcagatc 673
Query: 184 ccaattccttggatattttgtgagaaggaggtggccacaaacattgcttcatttcttctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ccaattccttggatattttgtgagaaggaggtggccacaaacattgcttcatttcttctc 613
Query: 244 ttcctctcaactgttctgagaaacagaaatcatgatgttatttccagggttctaagatgc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttcctctcaactgttctgagaaacagaaatcatgatgttatttccagggttctaagatgc 553
Query: 304 agatgtatctctaccctaggctaaatcacacagctggtacagtatcggagaaagcataac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agatgtatctctaccctaggctaaatcacacagctggtacagtatcggagaaagcataac 493
Query: 364 tgttatcaaagctgctttcacagttccacagagctgggtatcaaaacatgcccattatat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgttatcaaagctgctttcacagttccacagagctgggtatcaaaacatgcccattatat 433
Query: 424 tttggttcaacaaattactatcagtaactagtgaggaatgtttatgaagtctcttacccc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tttggttcaacaaattactatcagtaactagtgaggaatgtttatgaagtctcttacccc 373
Query: 484 tctcataatgaatggctcagttacttctcgagtacttcttctcagttgtcctggtagatc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tctcataatgaatggctcagttacttctcgagtacttcttctcagttgtcctggtagatc 313
Query: 544 ctggtaaatattgcaaagtaaataacctgagatccatcttgtggttcagactctcctggc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctggtaaatattgcaaagtaaataacctgagatccatcttgtggttcagactctcctggc 253
Query: 604 tttcactcagactcttttatttctcgaaagagcattgcatccttcccca 652
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttcactcagactcttttatttctcgaaagagcattgcatccttcccca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1051
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1041
Effective search space: 668322
Effective search space used: 668322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_n15.g1 MSMg01no137_n15.g1 CHROMAT_FILE:
MSMg01no137_n15.g1 PHD_FILE: MSMg01no137_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:41 2005
(656 letters)
>mm_chr6_67519151_67520206
Length = 1056
Score = 356 bits (184), Expect = e-102
Identities = 561/710 (79%), Gaps = 79/710 (11%)
Strand = Plus / Plus
Query: 1 aaagtaaaagggagaaagagtgtgggaaatcttgggaa-aggttttaggaagtgctagaa 59
|||| |||||||||||||| | | | |||| || |||| |||| ||||||| ||||||
Sbjct: 183 aaag-aaaagggagaaagaatattgaaaatatt-ggaagaggtaataggaagggctagag 240
Query: 60 agatggcaaaaccg------gcacagtggctgatattgcacagga-ctggggttcagttc 112
||||||||||| | |||| |||||| | ||||| |||| || || |||| |||
Sbjct: 241 agatggcaaaaaagttaggagcac--tggctggtcttgcagaggatct-ggcttcacttc 297
Query: 113 ttagca-----tgaatgtg-atggttcacca-ccatttttaactccagttttatggtgtc 165
|||||| | || | | ||||| || |||||| || |||||||||||||| ||
Sbjct: 298 ttagcacacact---tg-gca--gttca-cagccatttatatctccagttttatggaatc 350
Query: 166 ttctgaattcttttcactttcctaggtg--caggcatgcgcattgtcatgcataaatgca 223
| |||| | ||||| |||||||| || | ||||||| | |||| ||||||||||||||
Sbjct: 351 tgctgactccttttgactttcct-gg-gcacaggcattcatattgccatgcataaatgca 408
Query: 224 agtaaaaccactc--atcct-taaaatt-atataaaaacaatctta---actgagaaagc 276
||||||||| ||| || || ||| ||| | |||| |||| |||| ||||| |||
Sbjct: 409 agtaaaaccgctcttat-ctataatattca-ataatcacaaccttaaatactga-aaa-t 464
Query: 277 agattagcaagaggaagctgaaagagtacagagtagaaagt-gtaaaacaacctgtgact 335
||||||||||||||||||||||||| |||||| ||| |||| || |||||||||||||||
Sbjct: 465 agattagcaagaggaagctgaaagaatacagattaggaagtggt-aaacaacctgtgact 523
Query: 336 caagcaagagctctgttagtgggatat-agtgatgg---t---------taaatcagacc 382
|||||||||||||| || |||||| | |||||||| | |||| |||||
Sbjct: 524 caagcaagagctctattggtgggac-tcagtgatggaagtaccataggctaaaacagaca 582
Query: 383 gctctgccattcctacccacagaaaaagcccacagtgtttacaca-ccttaacatcaat- 440
|||||| |||||||||| ||||||||| |||| |||| ||||| | |||||||| | ||
Sbjct: 583 gctctgtcattcctaccaacagaaaaatcccatagtgcttaca-atccttaaca-ctatt 640
Query: 441 gatg-tcatttaatgttttagtgactcttctttctttgcatgctgacacttgaggagaag 499
|||| | ||||||||||| ||||| ||||||| ||| ||| ||| ||||||||||||||
Sbjct: 641 gatggt-atttaatgtttcagtgattcttcttgcttggcaaactggcacttgaggagaag 699
Query: 500 cctattctatcactcaata---ca-----t---ctagcctgtagacctagaaaaaag-aa 547
||||||||||||||| ||| || | |||| ||||||| ||||||| ||| ||
Sbjct: 700 cctattctatcactctatatgtcagagactaggctagtctgtagaactagaaacaaggaa 759
Query: 548 aacaaatcagaaatcta-gaagcaacctccacagatatactcatgaacagtaagaaagct 606
|| ||||||| || || |||||||| ||||||||||||||| || ||||||||||||||
Sbjct: 760 aaaaaatcaggaag-taagaagcaacatccacagatatactcctggacagtaagaaagct 818
Query: 607 tgatgtggagatgctgagaagtagtatcaacaggaggatcaggtcatgga 656
||||||||||| ||||||||||| ||| |||||||||||||| |||||
Sbjct: 819 agatgtggagata-tgagaagtagtgtcagcaggaggatcaggttatgga 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
