Query= MSMg01no138_a10.b1 MSMg01no138_a10.b1 CHROMAT_FILE:
MSMg01no138_a10.b1 PHD_FILE: MSMg01no138_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:55 2005
(647 letters)
>mm_chr16_60285332_60286373
Length = 1042
Score = 913 bits (472), Expect = 0.0
Identities = 600/652 (92%), Gaps = 23/652 (3%)
Strand = Plus / Plus
Query: 5 gaattcattgttttcttatagctgagtaatattccattgtgtaaatgtacc---ttttct 61
||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 209 gaattcattttttt-ttatagctgagtaatattccattgtgtaaatgtaccacctttt-- 265
Query: 62 gtatccattcctctgttgagggacatctgggttctttccagcttgccactgttgtttttc 121
| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 --a--cattcctcttttgagggacatatgggttctttccagcttgccactgttgtttttc 321
Query: 122 ttacagactctaagctcattcttccctacactcctttcctttcgtcttgattggctgatt 181
||| |||||||||||||||||||| ||||||||| |||||| |||||||||||||||||
Sbjct: 322 ttatagactctaagctcattcttctttacactcctctccttttgtcttgattggctgatt 381
Query: 182 acagttctacttcccagtcactatgagtataaattacattcattggctttatttcatatg 241
| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 382 aaagttctacttcccagtccctatga------attacattcattggctttatttcatatg 435
Query: 242 ctaggaactgaacctaggctcctcaaacatagtggagtgggcttgagatctccaattgag 301
|||| |||||||| ||||||||||||||| |||||||||||||| | ||||||| ||||
Sbjct: 436 ctagttactgaacccaggctcctcaaacatggtggagtgggcttgtgctctccaactgag 495
Query: 302 attatgctgctaaatctgcttcctgacatttaattttgttgattcaaattctggaaatta 361
|||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct: 496 attatgctgctagatctgcttcctgacattttattttcttgactcaaattctggaaatta 555
Query: 362 tttatttttt-atgaaaataagtggacctaaaataagtgacagatttattagaagactat 420
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 556 tttatttttttatgaaaataagtggacctaaaataaatgacagatttattagaagactag 615
Query: 421 gaaagcactccattgaaa-tgtcattcattcattctcaagagctcagaaaggagttcaga 479
||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gaaagcattccattgaaact-tcattcattcattctcaagagctcagaaaggagttcaga 674
Query: 480 aaggagatgctgtctgggaattagaagatactttatcatcaatctatctatctatctatc 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 675 aaggagatgctgtctgggaattagaagatactttatcatctatctatctatctatctatc 734
Query: 540 taatcatcatttgtcatatatccatctatcatatgtcatctctctatcagtctgtatcta 599
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 735 tagtcatcatttgtcatatatccatctatcatctgtcatctctctattagtctgtatcta 794
Query: 600 tctatc----atatatttctattcttatctctttatttctatctctatccct 647
|||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 795 tctatctatcatatatctctattcttatctctttatttctatctctatccct 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1042
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1032
Effective search space: 657384
Effective search space used: 657384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_a10.g1 MSMg01no138_a10.g1 CHROMAT_FILE:
MSMg01no138_a10.g1 PHD_FILE: MSMg01no138_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:55 2005
(622 letters)
>mm_chr16_60382300_60383319
Length = 1020
Score = 897 bits (464), Expect = 0.0
Identities = 489/498 (98%), Gaps = 2/498 (0%)
Strand = Plus / Minus
Query: 1 ttctaaccttaaaaacttcaagatctgtttgtgtagcacattactctttgtgctagaaat 60
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct: 496 ttctaaccttaaaaacttcaagatctgtttgcgtagcacattattctttatgctagaaat 437
Query: 61 ctatttatacagatgtatatatttctgcacttggggacagttgcccacatttagagttaa 120
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 436 ctatttatacagatg--tatatttctgcacttgtggacagttgcccacatttagagttaa 379
Query: 121 acagacattttctttttagttgcttgataatctgtctagctttttcttcagttgttaaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcagacattttctttttagttgcttgataatctgtctagctttttcttcagttgttaaat 319
Query: 181 aacaaaataaccatgctttaaatcttgtttatttttctgaagtctgagtattgtgaatca 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aacaaaataaccgtgctttaaatcttgtttatttttctgaagtctgagtattgtgaatca 259
Query: 241 gttgtatttcctctgtttttaaatcttgaaatacattgtcttgataaggtgacaactaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gttgtatttcctctgtttttaaatcttgaaatacattgtcttgataaggtgacaactaga 199
Query: 301 gttaaggcttgtgggaagagatgaaggtcaggaaggcaggagtgtcatgaatgggattta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gttaaggcttgtgggaagagatgaaggtcaggaaggcaggagtgtcatgaatgggattta 139
Query: 361 ttctgttataatggaggccacacaaaggtctctcgtatcttctatcatttaaggacacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ttctgttataatggaggccacacaaaggtctctcgtatcttctatcatttaaggacacac 79
Query: 421 tgagaggatagaactttaaacccagaagttgcatatcatagactcttagtatctggatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tgagaggatagaactttaaacccagaagttgcatatcatagactcttagtatctggatga 19
Query: 481 cttgttcactggattctt 498
|||||| |||||||||||
Sbjct: 18 cttgttaactggattctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1020
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1010
Effective search space: 618120
Effective search space used: 618120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
