Query= MSMg01no138_b14.b1 MSMg01no138_b14.b1 CHROMAT_FILE:
MSMg01no138_b14.b1 PHD_FILE: MSMg01no138_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:01 2005
(484 letters)
>mm_chr16_37806948_37807831
Length = 884
Score = 785 bits (406), Expect = 0.0
Identities = 462/482 (95%), Gaps = 5/482 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaaacagttccc--gggaactgagcatcgtgtacagcctctgtatattagaagt 61
|||||||||||||| || |||||||||||||||||||||||| | ||||||| |||||
Sbjct: 203 ggaattcaaacagt--ccaagggaactgagcatcgtgtacagccgccgtatattggaagt 260
Query: 62 tggtaaacgaaggctcggagagatgaagc-ttttcccccgagtcacactgtataggcagc 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 261 tggtaaacgaaggctcggagagatgaagctttttcccccgagtcacactgtataggcggc 320
Query: 121 aggcacatatctagggtccctttcctaggtccagcctgcctcttggtgcctgattcagca 180
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcacatatctagggtccctcccctaggtccagcctgcctcttggtgcctgattcagca 380
Query: 181 ctgaaatgctctcgccgcctcaccccagcatctacccagtcaccgttcactcatcttcca 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 ctgaaatgctctcgccgcctcaccccagcgtctacccagtcaccgttcactcatcttcca 440
Query: 241 ttcttcagagcctccttcccaggatcctgaatcttcctctactactctcttggcagcttt 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 ttcttcagagcctccttcccaggatcctgaatcttcctctgctactctcttggcagcttt 500
Query: 301 gcctttagagccctcgcatgctgagcaggctgctgactacagagaaaggagagagcctgt 360
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 acctttagagccctcgcacgctgagcaagctgctgactacagagaaaggagagagcctgt 560
Query: 361 aaccctaccttcattgtgctggccaagccctgtacaccagtctgctactgcatctgcctg 420
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccctacctgcattgtgcttgccaagccctgtacaccagtctgctactgcatctgcctg 620
Query: 421 gagagaaggtgtcctttctgctcgcagagacccctggtgggctggtgtgcacacgctctg 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 621 gagagaaggtgtcctttctgctcgcagagacccctggtgggctggtgggcacacgctgtg 680
Query: 481 ct 482
||
Sbjct: 681 ct 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_b14.g1 MSMg01no138_b14.g1 CHROMAT_FILE:
MSMg01no138_b14.g1 PHD_FILE: MSMg01no138_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:01 2005
(495 letters)
>mm_chr16_37940282_37941176
Length = 895
Score = 862 bits (446), Expect = 0.0
Identities = 481/498 (96%), Gaps = 11/498 (2%)
Strand = Plus / Minus
Query: 1 tctctctctctctctctctctctctctctctctctc-agatactgcatggcaggttctgt 59
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 689 tctctctctctctctctctctctctctctctctctcaagatactgcatggcaggctctgt 630
Query: 60 cagagacacctggaaagcagcggtgactgaaaggaagaccccttccagcacaatatgtca 119
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 629 cagatacacctggaaagcagcggtgactgaaaggaagaccccttccagcacagtatgtca 570
Query: 120 gtagggaagttgaacaataactgcaggtgaaagacacaagtaagagattatcttcaaaac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gtagggaagttgaacaataactgcaggtgaaagacacaagtaagagattatcttcaaaac 510
Query: 180 tattgaggatgatgaaggaaaagacagagcagagaaagagcctttgagaagatcggagag 239
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tattgaggacgacgaaggaaaagacagagcagagaaagagcctttgagaagatcggagag 450
Query: 240 gttaccaagagatctcaaatgaggtgggtcgtattttccttatgagcctaaatctgagcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gttaccaagagatctcaaatgaggtgggtcgtattttccttatgagcctaaatctgagcc 390
Query: 300 taaaaaacaaaatccaagtccaatcctactgtgaaaactatattatagcttccacaataa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 taaaaaacaaaatccaagtccaatcctactgtgaaaactatattatagcttccacaataa 330
Query: 360 tggcttctctgccatcatgtgggacaagagtggcatccatggtgatgagtcactgggact 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tggcttctctgccgtcatgtgggacaagagtggcatccatggtgatgagtcactgggact 270
Query: 420 gggcagcatgagtcaacagcagaacatgccctagcgggcctgg--ccccccccccccccc 477
||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 269 gggcagcatgagtcaacagcagaacatgccctagcgggcctggggccccccccc------ 216
Query: 478 ccgcattccatctccagc 495
||||||||||||||||
Sbjct: 215 --gcattccatctccagc 200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
