BAC Information

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BAC

Clone NameMSMg01-138F16
Chromosome16 (Build37)
Map Location 28,921,232 - 28,921,629
singlet/doubletsinglet
Overlap gene1600021P15Rik
Upstream geneFgf12
Downstream geneEG666717, Hrasls, Atp13a5, Atp13a4, Opa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138F16.T7 (MSMg01no138_f16.b1)MSMg01-138F16.TJ (MSMg01no138_f16.g1)
ACCAG344042AG344043
length857703
length of high quality
(start - end)
---398 (85 - 482)
definitionCHROMAT_FILE: MSMg01no138_f16.b1 PHD_FILE: MSMg01no138_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:22 2005CHROMAT_FILE: MSMg01no138_f16.g1 PHD_FILE: MSMg01no138_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTNNTNTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXGCCGCGGAATTCTCTTGTTCTTGGCATAGAGCCCCATGTTTAT
AATAGCGGGTTATTTAGATTGTTGCTGGAGTCCACCTCTCTATGAGCTCT
GTTATATATGATTGGGATATTACGTCGCCCTAGTCCGATTCTGAGGATGA
GGTCAAAGAGCCTGTTCCCAATCTTGTTCGGTGTGGCTTGTTTGTGCTTA
TTTGACGGTTGCCGTTGTGCGTTTGCAGATAGCTTCTGCACCTTGTCTAT
GAGGTGCCCTATTTATAGGACTTCTTAGATCGTTTGATGCACATAGGCAA
TGTGCTTGGTCTATGTCTCGAACGATTTTCCCCTTGTTTTTCTTATGATA
CGGAGGGCCTGTTCCCATATCCTGTCTCCCCTAATTTGTATTCCAGCGCA
CTCTCGCTATCCATTGTGGGCGCTACCCGTATCGCGTGATTTTCATTTTT
AGTCTCATCTACTATCGTAAAATTGCTATCATGCCTGCCTTTTAGTAATC
TCGTATTATCGCATCCCTCCTTACCCTTTCGTTTCCTCTTATCTTTTTGA
TAGTCCCGTTGTTTGCTATTTAACTTTCTCGTTCTCCTTTCTTTCTTCTT
GGCTACGCTTATCCCTATCCCTCTATCCTTTCCTCTGTCATCTCCCACCC
GCCCCCTTTTTATCTTCTATTACTATCTCTTTCACCCTCTCCATACTCAC
TGTTTTTATTCTCTCCTCCCATCCTTCTTACTTATTATCCCCTATTACGC
TCTTATTCTTTTCCCCATCTTTTATTATCCCCCCATCTCTCACCCTCTCT
TTTTTTT
TAACTATTTTTCGATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTGCGCAAGACAG
AGAACCAGGGACAGAAACACTGTAAATAAACAGGTGTATGGAACTGTTAC
TCAATTTGTTTGTTTTTCTTCTTTTTAAAAAAATACTTTTTTTTCCCCTC
AGTACAGAAGACGTGTGTACTGTTTGTGAGCTAAATGAAGCCTAGAGTGG
GAGTTGGTCTAGATTGTATTCATCTTTGTTTCTTCTAACAATGTCTGCCT
CGTATACACAGCGGATGGTGCTAAGCGTTCATACATTAGTTCATGGCTGG
TGTGCAACCGCGTGCTCGCATAGCTACTACCGTCATGCAGTTACCATGTA
AGAGCATTGAGTAGTGAATACGAACAGCGAGGCTACCGCCAAGGCTTCTT
TTCGTTCTCTGGAGGATGGATACCATGATTAAACTTGCAGATGAATCGAG
GCGTAGCCGCAAAGAAAATATGTAGTGCAGCCAATCATGTCGAGGATTTC
TGTCTGGACAGAGTGCAAGCGTCTTGTTATACTTTTCAGATCCCTATTTA
CCTGCCTGTCTTGAATCCCGTCATCTATACTTTTCTATCTTTATTGTTTA
TTCCTTATCCACACCGACTTCTTCTTATTACTCTTTTTTCTTCACTCATT
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_f16.g1 MSMg01no138_f16.g1 CHROMAT_FILE:
MSMg01no138_f16.g1 PHD_FILE: MSMg01no138_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:22 2005
         (398 letters)



>mm_chr16_28921032_28921829
          Length = 798

 Score =  712 bits (368), Expect = 0.0
 Identities = 392/402 (97%), Gaps = 8/402 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctgcgcaagacagagaaccagggacagaaacactgtaaataaacaggtgtatggaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cctctgcgcaagacagagaaccagggacagaaacactgtaaataaacaggtgtatggaac 539

                                                                       
Query: 61  tgttactcaatttgtttgtttttcttcttttt---aaaaaaatacttttttttcccctca 117
           ||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||
Sbjct: 538 tgttactcaatttgtttgtttttcttcttttttaaaaaaaaatac-tttttttcccctca 480

                                                                       
Query: 118 gtacagaagacgtgtgtactgtttgtgagctaaatgaagcctagagtgggagttggtcta 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtacagaagacgtgtgtactgtttgtgagctaaatgaagcctagagtgggagttggtcta 420

                                                                       
Query: 178 gattgtattcatctttgtttcttctaacaatgtctgcctcgtatacacagcggatggtgc 237
           |||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||
Sbjct: 419 gattgtattcatctttgtttcttctaacaatgtctgc--cgtctacacagcggatggtgc 362

                                                                       
Query: 238 taagcgttcatacattagttcatggctggtgtgcaaccgcgtgctcgcatagctactacc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taagcgttcatacattagttcatggctggtgtgcaaccgcgtgctcgcatagctactacc 302

                                                                       
Query: 298 gtcatgcagttaccatgtaagagcattgagtagtgaatacgaacagcgaggctaccgcca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtcatgcagttaccatgtaagagcattgagtagtgaatacgaacagcgaggctaccgcca 242

                                                     
Query: 358 aggcttcttttc-gttctctggaggatggataccatgattaa 398
           |||||||||| | |||||||||||||||| ||||||||||||
Sbjct: 241 aggcttcttt-ctgttctctggaggatggctaccatgattaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)