Query= MSMg01no139_f02.b1 MSMg01no139_f02.b1 CHROMAT_FILE:
MSMg01no139_f02.b1 PHD_FILE: MSMg01no139_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:40 2005
(464 letters)
>mm_chr16_90832216_90833084
Length = 869
Score = 857 bits (443), Expect = 0.0
Identities = 458/465 (98%), Gaps = 5/465 (1%)
Strand = Plus / Plus
Query: 5 gaattcctacctgacctctcagcaaa-taccttagcaaggtgtgaggcaaggctgcaggt 63
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctacctgacctctgagcaaaataccttagcaaggtgtgaggcaaggctgcaggt 264
Query: 64 ggcagttagttgtggggatggtttttagaatccatgctcaaagtgacaaatgtctttacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcagttagttgtggggatggtttttagaatccatgctcaaagtgacaaatgtctttacc 324
Query: 124 actgcaaccgccccggatctccatgtgctcggcatctttctccatcaaccccaagaagca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actgcaaccgccccggatctccatgtgctcggcatctttctccatcaaccccaagaagca 384
Query: 184 tctatctctacctacatcctttctcttgggaccttctgcctagctcaggctgggcacaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctatctctacctacatcctttctcttgggaccttctgcctagctcaggctgggcacaga 444
Query: 244 ctctagcaacccccttgctaccgtttttttttt----cttttctttttcagcataattgt 299
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 ctctagcaacccccttgctaccgttttttttttttttcttttctttttcagcataattgt 504
Query: 300 ggtaaagtcacctgtctgctccgctctgttctgctcgtgtgacagactactaggcaaaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtaaagtcacctgtctgctccgctctgttctgctcgtgtgacagactactaggcaaaga 564
Query: 360 aactggaagtgcagacttgagctgggtttctggtttgcttacagagaatgtcattcattg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aactggaagtgcagacttgagctgggtttctggtttgcttacagagaatgtcattcattg 624
Query: 420 gtagctgaggtcagaggttctttgcttagaatatttaatatcaag 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttagctgaggtcagaggttctttgcttagaatatttaatatcaag 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 869
Length adjustment: 10
Effective length of query: 454
Effective length of database: 859
Effective search space: 389986
Effective search space used: 389986
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_f02.g1 MSMg01no139_f02.g1 CHROMAT_FILE:
MSMg01no139_f02.g1 PHD_FILE: MSMg01no139_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:41 2005
(591 letters)
>mm_chr16_90975879_90976868
Length = 990
Score = 1096 bits (567), Expect = 0.0
Identities = 585/591 (98%), Gaps = 1/591 (0%)
Strand = Plus / Minus
Query: 1 ctttaggcttcagggatctgtatttaaagataatccactatgtatgtacttatatggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ctttaggcttcagggatctgtatttaaagataatccactatgtatgtacttatatggttt 731
Query: 61 aatatcgtctacctgtcttacttttaaaatggtttatgctccttttgaataagatttaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 730 aatatcgtctacctgtcttacttttaaaatggtttatgctccttttgaataagattt-aa 672
Query: 121 aaaaaaaacaacagcaacatagtcctaatagagtcctgtcccatttgtctttgtgtccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaaaaaaacaacagcaacatagtcctaatagagtcctgtcccatttgtctttgtgtccta 612
Query: 181 cacttgacacagggcctctatttaggaagtgtgtcacaaacagtgggtggacacacagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cacttgacacagggcctctatttaggaagtgtgtcacaaacagtgggtggacacacagcc 552
Query: 241 tatcaccaattgatacaaacagtgcagtgagcctgggattcattgggctcagtcagtaac 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 551 tatcaccaattgatacaaacagtgcagtgagcctgggattcgttgggctcagtcagtaac 492
Query: 301 tttttactctgctcttcttgctttcaacggaagctacgctgtgcagtaagggtggtgctc 360
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 491 tttttactctgctcttcttgttttcaacggaagctacgctgtgcagtaagggtggtgcgc 432
Query: 361 ggagtggtgacgattctgaatctcctcaggacttgtagctgcttgtattattttcagact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ggagtggtgacgattctgaatctcctcaggacttgtagctgcttgtattattttcagact 372
Query: 421 acttttctcttccgtacttgactcctgtcgtgggacttggggctgtatttggaatatgtt 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acttttctcttccgtacttggctcctgtcgtgggacttggggctgtatttggaatatgtt 312
Query: 481 ttatggtctatgtacttaaatcttgtttacctctttaaggaaccttggcctttgtttaat 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttacggtctatgtacttaaatcttgtttacctctttaaggaaccttggcctttgtttaat 252
Query: 541 tttttctaaatctcttaattcctccaattatttctggataaaagtgagaac 591
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttttctaaatctcttaattcctccaattatttctggataaaagtgagaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 990
Length adjustment: 10
Effective length of query: 581
Effective length of database: 980
Effective search space: 569380
Effective search space used: 569380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
