BAC Information

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BAC

Clone NameMSMg01-140C06
Chromosome16 (Build37)
Map Location 84,555,318 - 84,555,588
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039572, EG621729, LOC640489, LOC665664, LOC547311
Downstream geneLOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140C06.T7 (MSMg01no140_c06.b1)MSMg01-140C06.TJ (MSMg01no140_c06.g1)
ACCAG345362AG345363
length707710
length of high quality
(start - end)
274 (47 - 320)62 (75 - 136)
definitionCHROMAT_FILE: MSMg01no140_c06.b1 PHD_FILE: MSMg01no140_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:46 2005CHROMAT_FILE: MSMg01no140_c06.g1 PHD_FILE: MSMg01no140_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAGACCGCGGA
ATTCTCCTTCTGCTTCCCAGGAGACTTACTTCCCAAAGAAAGCACTGCAT
TGAAGACTTTGACTAAGAATCGCCTCTGAGGGATCTCAGTGCAGCACACA
GAGGAAACATCCTGCCAGCCAATTTCAGTGGGGGGCGGAAAAAAAAACCC
ACCACCACAACAAAAACAAAAACAAAGTGAACTGGAGGAGGGAGAGATAA
TACACAGCATGGTGTGTTTAATTATGTGAACGAGGCAATGCTGAGATTAA
AAGGTCGTTTTCAGGACACAGATAAATTGCCTGTCAGCACCCATGATGCA
TCTGGTTTTCTTTCTTTTCAGACTCCGCTATTTGCGGCAGATCTAGGGGT
TGGTCAACAGAGTATAATTAAGAATATTCAGTATGCTAAATAAGAGTGAT
GCTACGCCTATTCTGAAGGTATTAGTTGGAGATGCCCAAGTGTGCGGAAA
CTAACAGCTTTTGCTTTTTAACAATCCTATATGGATATAGCATAATCACA
CGAACCGTATGATGTGGCAATTTTATGTATACTGCGGTGCCTGTTTAATA
TATTCTGTGCCCCTTTGCTTACCCCCTTTTTTTATGCAACCTGGCGATAC
CAATTTCCCATTTTCCTCTCTATTCCTTTTTCTATATAACCCTGCGTTAT
TTCTATG
TCGATGATGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATCGAATGGCAGA
GAAGCATCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATC
ACAAATTCAGGTGACAGCAGATGCTGGTGTGCATGTGGAGAAAGAAGAAC
ACTCCTCCATTGTTGGTGGGATTGCACGTTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGCTCCTCAGAAAATTGTACATCGCACTACCGGAGGATCCA
GCAATACCTCTTCTGGGCATTTATTCTGATCATGCCTCATCTGGTAATAA
CGACACATGCTCCACTATGTTCATATCATCCTTATCTATATTATCCTCAA
TCTGCATTCGAACCTCATGCCCCTCATCAGATGAATGTATACCTAATATG
CGCGACTTCTACCCCATGTAGTACTACTTCATCTACTTTCAATTACTGTC
TTCCTCACACTCCTACATCTATGCTCGGACCCGTACTCTCTCATCTTCGT
CGCATGTACCTCTTCTTCTACAATCTTTCTTTCAACGTACCCTCTGACTA
TTGTCTATCTATCTTCTACTTCATAATTTTTCTTATACTAATACATCCTC
TTCTACCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_c06.b1 MSMg01no140_c06.b1 CHROMAT_FILE:
MSMg01no140_c06.b1 PHD_FILE: MSMg01no140_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:46 2005
         (274 letters)



>mm_chr16_84555116_84555788
          Length = 673

 Score =  511 bits (264), Expect = e-149
 Identities = 270/272 (99%), Gaps = 1/272 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctccttctgcttcccaggagacttacttcccaaagaaagcactgcattgaagact 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaattctccttctgcttcccaggagacttacttcccaaagaaagcactgcattgaagact 414

                                                                       
Query: 63  ttgactaagaatcgcctctgagggatctcagtgcagcacacagaggaaacatcctgccag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttgactaagaatcgcctctgagggatctcagtgcagcacacagaggaaacatcctgccag 354

                                                                       
Query: 123 ccaatttcagtggggggcggaaaaaaaaacccaccaccacaacaaaaacaaaaacaaagt 182
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ccaatttcagtggggggcg-aaaaaaaaacccaccaccacaacaaaaacaaaaacaaagt 295

                                                                       
Query: 183 gaactggaggagggagagataatacacagcatggtgtgtttaattatgtgaacgaggcaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gaactggaggagggagagataatacacagcatggtgtgtttaattatgtgaacgaggcaa 235

                                           
Query: 243 tgctgagattaaaaggtcgttttcaggacaca 274
           |||||||||||||||| |||||||||||||||
Sbjct: 234 tgctgagattaaaaggccgttttcaggacaca 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 673
Length adjustment: 9
Effective length of query: 265
Effective length of database: 664
Effective search space:   175960
Effective search space used:   175960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)