BAC Information

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BAC

Clone NameMSMg01-140E17
Chromosome16 (Build37)
Map Location 48,175,638 - 48,175,959
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628776, EG667741, EG639644
Downstream geneEG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140E17.T7 (MSMg01no140_e17.b1)MSMg01-140E17.TJ (MSMg01no140_e17.g1)
ACCAG345471AG345472
length704707
length of high quality
(start - end)
556 (50 - 605)326 (79 - 404)
definitionCHROMAT_FILE: MSMg01no140_e17.b1 PHD_FILE: MSMg01no140_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:59 2005CHROMAT_FILE: MSMg01no140_e17.g1 PHD_FILE: MSMg01no140_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAAATCTATAAXXXXXXXXXXXXXXXXXXXXXCTATTCAAAGAGGATC
CGCGGAATTCTCTGTTTACATCTGTTCCCCCCCTTTTTTTTTTTAGTAGG
ATTATTTGGTTTTCTGGAGTCTTCTCAAGTTCTTTGTATTATTGTGTACT
AGCCCTCTATTGGATGTAGGATTTGTAAAGATCTTTTCCCAATATGTTGG
TTGCCATTTTGTTCTATTGACAATGTCCTTTACCTTACAGAAGCTTTTCA
ATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTAGAGCATAAGCCATT
GGTGTTCTGCTTGGGAAATTATTGCCTGTGCCCATGTGTTCAAGACTTTT
CCCAACTTTCTCTTCTATTAGATTCGGTGTATCTGGTTTTATGTGAAGGT
TCTTGATCCACTTGGACTTGAGTTTTGTACATGGAGATAAAAATGGATCA
ATTTGCATTCTACATGTTGACCACTAGTTGAACCAGCACTATTTGTTGAA
AATGCTGTCTTTTTTCCACTGGGTGGCTTTAGATCCTTTGTCAATGATCA
AGTGGCCATAGATGTGTCATTTCATTTCTGGGTCTTTAGCTCTATTCCAT
TGATCTATCTGCCTGTCACTGTACCAATACCATGCATCTTTTATTGCACA
AACTATTGTTCCATAGTATCGCTTGATGTCTTGGATGGTGATTCCCCAAA
TAGT
AAAACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACTTCTGGCAGGCAGTCAG
TGCTCTTAACCTCTGAGCCATCTCTCCAGCCCATATTAAGCATATTTTAA
TGTGTTTCTTTGTTCAGCTTCTGTGTGAAAAATAGAAGGTTAGTGTAAAA
CAAACACTCAGAAACTGAATTGCTGAGTCACAAGGTTTGACTATTTCAGT
ATTTAGGAACAACTGGTGACCTAAAGTGTTCCCTTTCTCACTGCTCTTGA
CAATACTTGGTATTGTCTAGCCTTTAATCTTCATGTTGAGATCAATATGT
CTTTGGTGAGTATGCGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
AGGCTCTCATACTTCCCCCTTCCTTATCCTTTTAATTTATCCCCTTTCTT
CTATTAATCTCCTTCCTCTTTTTTCCATTTAATCTCAATTTCCATTCTTC
CTATCCTCATTTTCTCTACACTCTTCCCTTCTTATCATCTCTTTTTCTTC
CTCCTATAATCCTTTCTCTCACCCTTACCTTTTTCTCCCTTTTCCTCCCC
TTCCTTTTATCTCCTCTACCTATTTGTTCCTTTACCTTTACTTTTCACTT
TCCTCCCTTTATTACACTTTCTTGCCCATTTTCTTCCCCTCCCCTATTAC
ACTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_e17.g1 MSMg01no140_e17.g1 CHROMAT_FILE:
MSMg01no140_e17.g1 PHD_FILE: MSMg01no140_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:59 2005
         (326 letters)



>mm_chr16_48175429_48176154
          Length = 726

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacttctggcaggcagtcagtgctcttaacctctgagccatctctccagcccatatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aagacttctggcaggcagtcagtgctcttaacctctgagccatctctccagcccatatta 472

                                                                       
Query: 61  agcatattttaatgtgtttctttgttcagcttctgtgtgaaaaatagaaggttagtgtaa 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 471 agcatattttaatgtgtttctttgttcagcttctgtgtggaaaatagaaggttagtgtaa 412

                                                                       
Query: 121 aacaaacactcagaaactgaattgctgagtcacaaggtttgactatttcagtatttagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aacaaacactcagaaactgaattgctgagtcacaaggtttgactatttcagtatttagga 352

                                                                       
Query: 181 acaactggtgacctaaagtgttccctttctcactgctcttgacaatacttggtattgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 351 acaactggtgacctaaagtgttccctttctcactgctcttgacaacacttggtattgtct 292

                                                                       
Query: 241 agcctttaatcttcatgttgagatcaatatgtctttggtgagtatgcgtgtttgtgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agcctttaatcttcatgttgagatcaatatgtctttggtgagtatgcgtgtttgtgtgtg 232

                                 
Query: 301 tgtgtgtgtgtgtgtgtgtgtg 322
           ||||||||||||||||||||||
Sbjct: 231 tgtgtgtgtgtgtgtgtgtgtg 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)