BAC Information

Click to search

BAC

Clone NameMSMg01-140E20
Chromosome16 (Build37)
Map Location 59,346,891 - 59,347,377
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206
Downstream geneOlfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6, Epha6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140E20.T7 (MSMg01no140_e20.b1)MSMg01-140E20.TJ (MSMg01no140_e20.g1)
ACCAG345477AG345478
length720721
length of high quality
(start - end)
492 (39 - 530)487 (72 - 558)
definitionCHROMAT_FILE: MSMg01no140_e20.b1 PHD_FILE: MSMg01no140_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:59 2005CHROMAT_FILE: MSMg01no140_e20.g1 PHD_FILE: MSMg01no140_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTATACGACTCCTATATTCAGAAATCCGCGGAATTCT
CCACTATTCTCTCAGAGCCTGGACTTTTGTTGATTGGGAGGCTATTAATG
ACTGCTTCTATTTTTTTTAGAGGTTGCAGCACTGTTTAGATGGTTTGTCT
GATTCTGTTTTAACTTTGGCACCTGCTATGTGTCTAGAGAATTATCCATT
TCATCCAGATTTTCCAATTTTATTGAGTATAGGCTTTTGTAATAGGATCT
GATGCTTTTTCAGTTTCCATGGTTTCCTTTGTTATGTCTCCCTTTTAATT
TCTGAATTTATTAATTTGGATACTGTCTCTGTGCCCTCTAGTTATCCTCG
CTAATAGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAGTGCCTGGTT
TTGTTGATTCCTTGTATAGTTCTTTTTGTTTCTATTTGGCTGATTTCAGC
CTGAGCTTGATTATTTCCTGCTGTCTACTCCTCAGGTCTACTAACTTCCT
TTTGTTCTAGAACTTTCAGTTGTGCTGTCAAGCTGTTAGTGTAATCTCTC
TCTTGTTTCTTTTTGGAGGCCCCTATAGCTATGAATTTTCCTCTTAAGAC
TGCTTTCATTGTGTCCCCTAGCTCTTGTAACGATTTTTCTTTATTCTCAT
TAACCTACAAAATTTCCCCATTTTTCCCTCTATTATTCTTTTTTGACCAC
CCTCCCCAGTTTTTACAGCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATCCTACAGGCTATTTCACCGCAGTAGA
CTCTATAGGGTTTCTGAGAGACTGAGATATTTCAAGGATATCTGACATAT
ATACATTATTTAGTTTCTCTTCCCCTTAAGATATGCACATAGAAACACAA
AAACAAAAATCAATAAAATCACAATAAGAGGAATTAACAGTGTTTGGAAG
ATTTGTATAGTGATAATTTTGTTTCATGAGGCCTGATTATAGAATAGTTA
ATAATTAGTACACAGACACTAATTACTCTGTTAATGTGTTTACATGCCTA
TTAAAATTATAAGTACTTTTTCTTTTTCTTATTCTCTATAAATATAGAGA
ACACACTTCACAAGAAGTTTTCCTATTTTGTAGAACAAAAACCTTAAACA
CCTTTCTACAAATTATTTCAGTTCTCCATGTTTCTATTGTTTTAAATTGT
ATTTTGCATACATACTTTTCCCTTTCACATTTAATTTGACAGTTGTTGAA
GCAATTAGTTGCTCGGTGCCATGCATTTACACATGATGCTCTTATCTACT
TGTATAAAGAGTTAACGATGACCATAAACATAAAAGTTTATGTCGGTAAT
AACGCCACTTGATTGATCAGATTCCACCATCAGAATAAGTTTACTCTTAT
TAATCAAACTTCTGTCCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_e20.g1 MSMg01no140_e20.g1 CHROMAT_FILE:
MSMg01no140_e20.g1 PHD_FILE: MSMg01no140_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:59 2005
         (487 letters)



>mm_chr16_59346691_59347577
          Length = 887

 Score =  926 bits (479), Expect = 0.0
 Identities = 485/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcctacaggctatttcaccgcagtagactctatagggtttctgagagactgagatatt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aatcctacaggctatttcacagcagtagactctatagggtttctgagagactgagatatt 628

                                                                       
Query: 61  tcaaggatatctgacatatatacattatttagtttctcttccccttaagatatgcacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcaaggatatctgacatatatacattatttagtttctcttccccttaagatatgcacata 568

                                                                       
Query: 121 gaaacacaaaaacaaaaatcaataaaatcacaataagaggaattaacagtgtttggaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaaacacaaaaacaaaaatcaataaaatcacaataagaggaattaacagtgtttggaaga 508

                                                                       
Query: 181 tttgtatagtgataattttgtttcatgaggcctgattatagaatagttaataattagtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttgtatagtgataattttgtttcatgaggcctgattatagaatagttaataattagtac 448

                                                                       
Query: 241 acagacactaattactctgttaatgtgtttacatgcctattaaaattataagtacttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acagacactaattactctgttaatgtgtttacatgcctattaaaattataagtacttttt 388

                                                                       
Query: 301 ctttttcttattctctataaatatagagaacacacttcacaagaagttttcctattttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctttttcttattctctataaatatagagaacacacttcacaagaagttttcctattttgt 328

                                                                       
Query: 361 agaacaaaaaccttaaacacctttctacaaattatttcagttctccatgtttctattgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agaacaaaaaccttaaacacctttctacaaattatttcagttctccatgtttctattgtt 268

                                                                       
Query: 421 ttaaattgtattttgcatacatacttttccctttcacatttaatttgacagttgttgaag 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttaaattgtattttgcatatatacttttccctttcacatttaatttgacagttgttgaag 208

                  
Query: 481 caattag 487
           |||||||
Sbjct: 207 caattag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)