BAC Information

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BAC

Clone NameMSMg01-140M06
Chromosome16 (Build37)
Map Location 85,274,955 - 85,275,281
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665664, LOC547311, LOC100039893, LOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App
Downstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025, LOC100039780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140M06.T7 (MSMg01no140_m06.b1)MSMg01-140M06.TJ (MSMg01no140_m06.g1)
ACCAG345815AG345816
length709709
length of high quality
(start - end)
540 (43 - 582)330 (72 - 401)
definitionCHROMAT_FILE: MSMg01no140_m06.b1 PHD_FILE: MSMg01no140_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:36 2005CHROMAT_FILE: MSMg01no140_m06.g1 PHD_FILE: MSMg01no140_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGATGCTACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGT
GCAGGCTCGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
CTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAAC
TCACACAATATGTATTCACTGATAAGTGGATATTATCCCCAAACCTAGGA
TACCCAAGATATAAGATATAATTTTGCTAAACACATGAAACTCAAGAAGA
ATGACGACG
AATACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTGCCGTTTTAATGATTTAAATTTACAT
TTCTCTACTAACCAGCCTTGTTAGACCATTTGTGCTTATTGACCATTTAC
ATGTATTATTTGATGAAGCTTTGTATTAAAAAAAATTCCCAATTTTTATC
GGCTTGTCTTACTGAGTTGGAAAAGTGTATTCTGTGTTTATAAAGCAGAT
CACAGATTACATTTGTATTCTTTGTTTCCAAATTTGTAACAATTTCTTTT
TGGTTTCTGGATAATATCTTCTGAATGACAGACTTTAATCTTTCAAAGTC
ATTAATATTTTTGCTTTTATAATTAATATACTTTAAAACAAATCTAGTGC
CCTAGTTTGTCTTTCTGTTGTTAAGATAAGCATCACAACCAGAAAAATTT
ATAAAGGTGAGGGTTTATTTTGCTTATGCTTCCAGGTCACAGGTCATCTT
TGGCAACGCAAAGGCATGAACTACAGGCAGGACATTGCAACTTAATCACT
CACACGCATACTATTCTCTGGCTTGTTCCTCATCCTGCCTTCAGCTACTG
GTTTTAACACACAACGTCCCCCTTACTAATGCTGGTACTACCTCCTAGTG
TGTTGTCCACTCTCTGCTTCATACTACCTTTTATTTAATGCTCCTCCCAC
GTTGACGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_m06.g1 MSMg01no140_m06.g1 CHROMAT_FILE:
MSMg01no140_m06.g1 PHD_FILE: MSMg01no140_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:36 2005
         (330 letters)



>mm_chr16_85274754_85275483
          Length = 730

 Score =  557 bits (288), Expect = e-163
 Identities = 318/328 (96%), Gaps = 1/328 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgccgttttaatgatttaaatttacatttctctactaaccagccttgttagaccattt 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgtgccattttaatgatttaaatttacatttctctactaaccagccttgttagaccattt 261

                                                                       
Query: 61  gtgcttattgaccatttacatgtattatttgatgaagctttgtattaaaaaaaattccca 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 gtgcttattgaccatttacatgtattatttgatgaagctttgtatt-aaaaaaattccca 320

                                                                       
Query: 121 atttttatcggcttgtcttactgagttggaaaagtgtattctgtgtttataaagcagatc 180
           |||||||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct: 321 atttttatcgacttgtcttactgagctggaaaagtgtattctatgtttttaaagcagatc 380

                                                                       
Query: 181 acagattacatttgtattctttgtttccaaatttgtaacaatttctttttggtttctgga 240
           || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acggattatatttgtattctttgtttccaaatttgtaacaatttctttttggtttctgga 440

                                                                       
Query: 241 taatatcttctgaatgacagactttaatctttcaaagtcattaatatttttgcttttata 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taatatcttctgaaggacagactttaatctttcaaagtcattaatatttttgcttttata 500

                                       
Query: 301 attaatatactttaaaacaaatctagtg 328
           |||||||||||||||||||| |||||||
Sbjct: 501 attaatatactttaaaacaagtctagtg 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)