Query= MSMg01no140_p09.b1 MSMg01no140_p09.b1 CHROMAT_FILE:
MSMg01no140_p09.b1 PHD_FILE: MSMg01no140_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:52 2005
(668 letters)
>mm_chr16_42459463_42460533
Length = 1071
Score = 1237 bits (640), Expect = 0.0
Identities = 661/670 (98%), Gaps = 7/670 (1%)
Strand = Plus / Plus
Query: 3 ggaattccaataatttca---actctgccgcttgac-tgcaagggctctgtgatatatca 58
|||||||||||||| || ||||||||||||||| |||||||||||||||||||||||
Sbjct: 203 ggaattccaataat--cactaactctgccgcttgacatgcaagggctctgtgatatatca 260
Query: 59 tttgccctcagcacttctgaggctcatgagcccagtattttgtatggctgcaatgattca 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgccctcagcacttctgaggctcatgagcccagtattttgtatggctgcaatgattca 320
Query: 119 cagtatagaagacttacaggctccccagcataagaaaaaatagttcccctgaaaacctca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtatagaagacttacaggctccccagcataagaaaaaatagttcccctgaaaacctca 380
Query: 179 gctcctcacagttgtatctgtcagacacaacaatgaaattttgctctctcaaagcaactg 238
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatcctcacagttgtatctgtcagacacaacaatgaaattttgctctctcaaagcaactg 440
Query: 239 taagaagttatttttaattgaatataaaacccatctccctagctgtatttactatgtcat 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagaagttatttttaattgaatataaaacccatctccctagctgtatttactatgtcac 500
Query: 299 ccaaggtttagacatctccctttagaatgaggttctatttttctgagagagccagataaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaaggtttagacatctccctttagaatgaggttctatttttctgagagagccagataaa 560
Query: 359 ggggctgggttttgtttcatggctctctgagagaaaccagttagggtcaattgactgggg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggctgggttttgtttcatggctctctgagagaaaccagttagggtcaattgactgggg 620
Query: 419 aactttataaaagtctcctcagcaatgctaccctgatggcatgctaacccccaagaaaca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactttataaaagtctcctcagcaatgctaccctgatggcatgctaacccccaagaaaca 680
Query: 479 gctatgaattctagtctggatgttatgatgccagccatttatcttctactctagactaca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctatgaattctagtctggatgttatgatgccagccatttatcttctactctagactaca 740
Query: 539 gattgcatgtcattctaaggag-gggggagggatggcttctttccattcttctaaaccac 597
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 gattgcatgtcattctaaggagtgggggagggatggcttctttccattcttctaaaccac 800
Query: 598 tggtggccatagagctccacatagaatcaagaataatatgcaagaaagtatgtgatgcta 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggtggccatagagctccacatagaatcaagaataatatgcaagaaagtatgtgatgcta 860
Query: 658 gttcatatct 667
||||||||||
Sbjct: 861 gttcatatct 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1071
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1061
Effective search space: 698138
Effective search space used: 698138
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_p09.g1 MSMg01no140_p09.g1 CHROMAT_FILE:
MSMg01no140_p09.g1 PHD_FILE: MSMg01no140_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:52 2005
(634 letters)
>mm_chr16_42546923_42547956
Length = 1034
Score = 1013 bits (524), Expect = 0.0
Identities = 560/588 (95%), Gaps = 25/588 (4%)
Strand = Plus / Minus
Query: 46 ggtatttgagggagcagagtgcatgagcacttgggaagcagtatgactgaactaagcaag 105
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1034 ggtatttgagggagcagagtgcatgtgcacttgggaagcagtatgactgaactaagcaag 975
Query: 106 gcagagagatgaaactagtgctatctgagctgggagtcattcctcatttggcattgctgc 165
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 974 gcagagagatgaaactagtgcgatctgagctgggagtcattcctcatttggcattgctgc 915
Query: 166 aggaagtgacatcctctgatggagatatcagtggaagatggcaagccactctgtatcact 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 aggaagtgacatcctctgatggagatatcagtggaagatggcaagccactctgtatcact 855
Query: 226 ctagagaatgtgggacttacctgtgaatggtaaggtcatttggaaatgtgaatgatgagg 285
|||||||||||||||||||||||||||||| |||||
Sbjct: 854 ctagagaatgtgggacttacctgtgaatgg-------------------------tgagg 820
Query: 286 agccactaagatttttaaggaaggagtggtctgatgatgcggatttattttaaatatcag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 agccactaagatttttaaggaaggagtggtctgatgatgcggatttattttaaatatcag 760
Query: 346 ctatatatcatcctaattattaattttgtacaatgataacgataagagaaatttaaaagt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ctatatatcatcctaattattaattttgtacaatgataacgataagagaaatttaaaagt 700
Query: 406 attcttgcactttaaattggatatagtactgaactgatgacatagcatgtacagattact 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 attcttgcactttaaattggatatagtactgaactgatgacatagcatgtacagattact 640
Query: 466 atggatactatattttttaagaaagacaataatgtatgactttgaatctatgacagtgta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 atggatactatattttttaagaaagacaataatgtatgactttgaatctatgacagtgta 580
Query: 526 ggttctgatgatcagcttttttactgttacccactgttatttgaaacccataaggtatca 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ggttctgatgatcagcttttttactgttacccactgttatttgaaacccataaggtatca 520
Query: 586 aaagaaatgtagtcatagccttctgaaagaatttcaaatttttagtct 633
||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 519 aaagaaatgtagtcataaccttctgaaagaatttcaaatttttagtct 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
