Query= MSMg01no141_a12.b1 MSMg01no141_a12.b1 CHROMAT_FILE:
MSMg01no141_a12.b1 PHD_FILE: MSMg01no141_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:59 2005
(708 letters)
>mm_chr16_90559943_90561056
Length = 1114
Score = 1135 bits (587), Expect = 0.0
Identities = 680/714 (95%), Gaps = 6/714 (0%)
Strand = Plus / Plus
Query: 1 aggtggatggngacagagagtctcaggacccgtaatcatgtgtgttacccccttacacaa 60
|||||||||| |||||||||||||||||| | |||||||||||| | | ||||||||
Sbjct: 201 aggtggatggtgacagagagtctcaggacttggaatcatgtgtgtcaacagtttacacaa 260
Query: 61 ggctctgggtggcagccctcccatcatgggctgcttgctccaggagccatgggttcaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctctgggtggcagccctcccatcatgggctgcttgctccaggagccatgggttcaccc 320
Query: 121 gcctccatgctagaagacgcatgacttgtcaaagagtgaagagcccaagtaggcacatga 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gcctccatgctagaagacgcatgacttgtcaaagagtgcagagcccaagtaggcacatga 380
Query: 181 gaggaggtgaagacaggagaactgggagttgggctcacccactgggacaccccaagttcc 240
|||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||
Sbjct: 381 gaggaggtgaagacaggaaaactgggagttgggttcactcactgggacaccccaagttcc 440
Query: 241 cctgctgtaggttaggggacaatcagtaattctttctggtggggccgacaaggccacaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgctgtaggttaggggacaatcagtaattctttctggtggggccgacaaggccacaga 500
Query: 301 cagcaccgggctttatgactgatatatgcccctggatttactgagagccttctgccttcc 360
|||||||||||||||||||||| | |||||| |||||||||||||||| |||||||||||
Sbjct: 501 cagcaccgggctttatgactgaaagatgcccttggatttactgagagctttctgccttcc 560
Query: 361 gggtctttaacaagactgagttcatttaattctccgacagacctgtcaaccggtagatgg 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 gggtctttaacaagactgagttcatttaattctctgacagacctgtcaaccggtagatgg 620
Query: 421 tgacagagatg-----gtcctggggccatgtgtatcttagcagtctacccaatagcctca 475
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgacagagatgctcaggtcctggggccatgtgtatcttagcagtctacccaatagcctca 680
Query: 476 ccaatagcttgcttcttctatcaattaaggggtt-taggattctgagaacccagggacaa 534
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 ccaatagcctgcttcttctatcaattaaggggttctaggattctgagaacccagggacaa 740
Query: 535 ctaatcccaaaggaatacacttcaggcctccaagatctcatcagacctcgtgggtaggtc 594
||||||||||||||||||||||||||||||||||||||| |||| |||| ||| | ||||
Sbjct: 741 ctaatcccaaaggaatacacttcaggcctccaagatctcctcaggcctcatggattggtc 800
Query: 595 acctctcccagtggcactgtgaatgccataatttctccctgcccatcccctctgtcttac 654
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 801 acctctcccagtggcactgtgaacaccatcatttctccctgcccatcccctctgtcttat 860
Query: 655 gtagcccaggatagcctcactctccctatgtacccaaggacgactcctgattct 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtagcccaggatagcctcactctccctatgtacccaaggacgactcctgattct 914
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1114
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1104
Effective search space: 770592
Effective search space used: 770592
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_a12.g1 MSMg01no141_a12.g1 CHROMAT_FILE:
MSMg01no141_a12.g1 PHD_FILE: MSMg01no141_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:59 2005
(621 letters)
>mm_chr16_90697641_90698661
Length = 1021
Score = 636 bits (329), Expect = 0.0
Identities = 361/375 (96%), Gaps = 7/375 (1%)
Strand = Plus / Minus
Query: 251 acattggtctcccagtgtctcattttgaagggtttgcctcgagtctcctcagaagagctt 310
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1021 acattggtctcccagtgtctcattttgaagggtttgcctcaagtctcctcagaagagctt 962
Query: 311 ttggccttttc----tttatgttgagactgttatccactgtggggactttttaagttggg 366
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ttggccttttcagca---atgttgagactgttatccactgtggggactttttaagttggg 905
Query: 367 ttgaacgcgattcgtattgagatgaccatgggccaaggagtcaggggtcgggggttgtgt 426
||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 904 ttgaatgcgattcgtattgagatgaccatgggccacggagccaggggtcgggggttgtgt 845
Query: 427 tttgaatgtgtctcatgtatttgcacacttgatctctgtgcggccttggtttagaaggct 486
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 844 tttgaatgtgtctcatgtatttgcacacttgatctctgtgtggccttgctttagaaggct 785
Query: 487 gtggaatctttagggggtggaatctcactggagagggtaagtgagcgggggcagaccttg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gtggaatctttagggggtggaatctcactggagagggtaagtgagcgggggcagaccttg 725
Query: 547 aagtttcagaacccagcacacttctaggctgctctctgtttctggtcctcctgatatata 606
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aagtttcagaacccagcacacttctaggctgctctctgtttctggtcctcctgatatatg 665
Query: 607 aggagaagatgaggc 621
|||||||||||||||
Sbjct: 664 aggagaagatgaggc 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
