Query= MSMg01no141_c16.b1 MSMg01no141_c16.b1 CHROMAT_FILE:
MSMg01no141_c16.b1 PHD_FILE: MSMg01no141_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:15 2005
(123 letters)
>mm_chr16_39729396_39729918
Length = 523
Score = 207 bits (107), Expect = 2e-58
Identities = 119/123 (96%)
Strand = Plus / Plus
Query: 1 accttcctatcatctccctgccccataacacctcctgtcataacaacttcctgtcatctt 60
||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||||
Sbjct: 201 accttcctatcatcttcctgtcacataacacttcctgtcataacaacttcctgtcatctt 260
Query: 61 cctatgcaattgtcatttctaggactagtgttgatttctatgatgtgaactattttacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctatgcaattgtcatttctaggactagtgttgatttctatgatgtgaactattttacat 320
Query: 121 gcc 123
|||
Sbjct: 321 gcc 323
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space: 59225
Effective search space used: 59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no141_c16.g1 MSMg01no141_c16.g1 CHROMAT_FILE:
MSMg01no141_c16.g1 PHD_FILE: MSMg01no141_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:15 2005
(705 letters)
>mm_chr16_39900705_39901809
Length = 1105
Score = 1239 bits (641), Expect = 0.0
Identities = 689/705 (97%), Gaps = 1/705 (0%)
Strand = Plus / Minus
Query: 1 tgcttcttttaaaacccgagtcaaaacatgatcagctgctgcagacagtcagaattagtc 60
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 1050 tgcttcttttaaaacatgagtcaaaacatgatcagctgctgcagacagtcggaatttgtc 991
Query: 61 tcttacccccacccctggaattaaaacaagaccatatacttataatagtgctgtatcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 tcttacccccacccctggaattaaaacaagaccatatacttataatagtgctgtatcttc 931
Query: 121 tacagaaaccaaaattccagaatttttttttctacttatcaagcttttcttttcctcact 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 930 tacagaaaccaaaattccagaa-ttttttttctacttatcaagcttttcttttcctcact 872
Query: 181 cagaaactgatatgaagcctaaggttcttaaagacctcaaaaagtgaactctggtaagat 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 cagaaacagatatgaagcctaaggttcttaaagacctcaaaaagtgaactctggtaagat 812
Query: 241 aataaagcatataaagttcaaattacaaaatgcacagatattacacatatatattcacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aataaagcatataaagttcaaattacaaaatgcacagatattacacatatatattcacat 752
Query: 301 tagaaggaataaggagacaagactgtctttgtgtgcgattgtacatatatgagccagcat 360
||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 751 tagaagggataaggagacaagattgtctttgtgtgtgattgtacatatatgagccagcat 692
Query: 361 gaattattggttataataggtatgcaagaaaaatgtttaacattctacattccattctct 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 691 gaattattggttataataggtatgcaagaaaaatgtttaacattccacattccattctct 632
Query: 421 cttggtattctaagaaataatcacaatgttcatcagaacaacgtgactttataatttaaa 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 631 cttggtattctaagaaataatcacaatgttcatcagaacaacgtgattttataatttaaa 572
Query: 481 tttcttttgcccagaactttaatgaaaatatgttctaatgggtttaagggccaaattaaa 540
||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||
Sbjct: 571 tttcttttgcccagaactttaataaaaatacattctaatgggtttaggggccaaattaaa 512
Query: 541 agtgttcttctagtgttcagcaatgaatctccatgcaagcatcttctgattcagttcaat 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 511 agtgttcttctagtgttcagcaatgaatctccatgcaatcatcttctgattcagttcaat 452
Query: 601 gtagaacagacgtcctcatttcattagccttcttggctagctcaggaccctttaagcttc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtagaacagacgtcctcatttcattagccttcttggctagctcaggaccctttaagcttc 392
Query: 661 ctggctacctgtacttcccctgtcatgctcatccttgtctactgt 705
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctggctacctgtacttcccctgtcatgctcatccttgtctactgt 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
