BAC Information

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BAC

Clone NameMSMg01-141K14
Chromosome16 (Build37)
Map Location 79,541,727 - 79,542,264
singlet/doubletsinglet
Overlap genenone
Upstream geneD16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141K14.T7 (MSMg01no141_k14.b1)MSMg01-141K14.TJ (MSMg01no141_k14.g1)
ACCAG346478AG346479
length1,2731,280
length of high quality
(start - end)
538 (89 - 626)675 (94 - 768)
definitionCHROMAT_FILE: MSMg01no141_k14.b1 PHD_FILE: MSMg01no141_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:19 2005CHROMAT_FILE: MSMg01no141_k14.g1 PHD_FILE: MSMg01no141_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTCTTNNNNNTTCACTGGGCGCTAAGACTCCTATGGGAGAGGATCCG
CGGAATTCTCAAGCACGTTTGTCACCGTTTGACTTAAGTTTCAGTTAAAT
CAAAATATCCTCATTCCCTTTGCCAGAGAGATGATCCACTTCCATGGAGA
TGTCTTGAATTCCTGTAATTATCATGATTGGTAGAAGAAGTGCATAGTAC
CTTAATAAGTATGATAATGTGTTCTTGGGAACATGACAAGAAGATAATTT
ATTCAAGTTACCATATCAATAGGTCATGTTTATTTATTTTAGATAATTAC
TTGTTTATTTAATTTTCTGTGTATATTTTCTCCACTGACATATAACTGGG
CCATGTACATGTGTGTTTGAGTGGAGGCCAGAAGAGACCTTTCAGTTAAC
TAGGACTGTTTTTTTGGAAGGCTGATAGCAGACATATAAATGCTAGGAAA
TTAGCCTGAAATCTCTGTTAGAGAAACCAGTGCTCTCAACAACTGAGCCA
TCTTTACAACCCTATTTAACATGTTTATATAAAATACAATTATACTATAA
CACTGTAAATATTATAACAATTTATAGCATCAAATGATGAATATAGTAAT
AGAATGGATGGTAGAGGCACTAGATTTAGTAAGCAATAATGTCTAGAGTT
TATGTTGGATGACATTTTTCAGTTGTCATGCTTATATTTATTAAGAACTT
TATGGCATATGTGTTGAAGTATTTCTATACAGAAAGCCCCACCATATATA
CATTTGTATTCTGAAGTATTGAATAATTTAATTTTGTTATTTTTTGTTAT
CAATATTTTTTTTTTTCTTGATTATTTTTTGTTTGAATTTAAATCTTACA
TTTTTATCTCTATTGTTCTTTTTTATTTCTTTTATCCTCCATTCCTCTTT
AACTTTATTTTTTTTTATTTCTTATCTTTTTGCTTTTCTTTTTTTTATTT
TTCTTCAACTTTTCTTTTTTCTTCTGCTTTTTATTTTCTTCCTTTGTATC
TTTCTCTCTTTTCCTGTTTTCTTATCTTTTATCTTCTTCTTTTTCTTTTT
TTCTTCTTTTTCTGTCTATTTATTTTTTTCCATTTTTATCTTTTTTCTTT
TTCTTCCCTTTTTCCTGTTATTCCTCTTTTTTTTTCTTTCCTTCTTTGTA
CTCTCTTTTTTTCTTCCTTTTCTTATATCTTTCTTATTATATATACTCTT
TTTTCCTTCTCTTTTCTATTTATATTATTTTCACTCTGTTATTCTACTCT
TTTCTCTTATCTATTCTCTTTCG
NCCCAGTCTTTTTTNTTAACATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAGACGAATACCG
AATGGCAGAGAAGCACCTGAACCATTGCTCAACATCCTTAACCACCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAGATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCG
GAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAA
TAGCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATA
CAGAAGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCA
CTGATAAGTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATA
CAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAA
CACTATGCCCCTCCTTAGAAGTGGGAGCAAAACACCCTTGGAAGGAGTTA
CCGAGACTAAGTTTGGAGTTGAGATAAAAGGATGGACCATGTATACACTA
CCATAATCCGGTGACCCTCCCATAATCCAGTTCCCAATGCTTGACCCATT
GCTAACACTACCAAGAATTATGCTGAATGGACCCTGAATATAGCTGTCCT
CTTGCCCAATAATGCCCTGGGCCTATCCAAACTTATAAGTGGATGCCTCC
AGTCCTCTTTTTGGTAGGTAATCAATGTCCCCCCTAGGATTGATCTTTAA
AAAATTTCCAAACATCTTAAGGGTACTTCACTCTCCATTATTCGTCACAA
CCCTTATTAACTTTTTCTCCTTCCCCTGCTACTTTTTTAATTCTCTCTTA
CTATACCCTCTCAAAAATGGTCCTTATTCTTTTCTCTCATGATAAACAAA
TGTCACCTCTCGACTCTCCCTCTTCTTCTCTACCTCCCTCATAATTCAAT
AACTTCTCTTTCTATATTTGATCTGTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_k14.b1 MSMg01no141_k14.b1 CHROMAT_FILE:
MSMg01no141_k14.b1 PHD_FILE: MSMg01no141_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:19 2005
         (538 letters)



>mm_chr16_79541527_79542464
          Length = 938

 Score =  963 bits (498), Expect = 0.0
 Identities = 528/538 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcagttaaatcaaaatatcctcattccctttgccagagagatgatccacttccatgga 60
           ||||||||||||||||||||||||||| |   |||||||||||||||| |||||||||||
Sbjct: 201 tttcagttaaatcaaaatatcctcattacaagtgccagagagatgatcaacttccatgga 260

                                                                       
Query: 61  gatgtcttgaattcctgtaattatcatgattggtagaagaagtgcatagtaccttaataa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gatgtcttgaattcctgtaattatcatgattggtagaagaagtgcatagtaccttagtaa 320

                                                                       
Query: 121 gtatgataatgtgttcttgggaacatgacaagaagataatttattcaagttaccatatca 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatgataatgtgttcttaggaacatgacaagaagataatttattcaagttaccatatca 380

                                                                       
Query: 181 ataggtcatgtttatttattttagataattacttgtttatttaattttctgtgtatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataggtcatgtttatttattttagataattacttgtttatttaattttctgtgtatattt 440

                                                                       
Query: 241 tctccactgacatataactgggccatgtacatgtgtgtttgagtggaggccagaagagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctccactgacatataactgggccatgtacatgtgtgtttgagtggaggccagaagagac 500

                                                                       
Query: 301 ctttcagttaactaggactgtttttttggaaggctgatagcagacatataaatgctagga 360
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttcagttaactaggactggaattttggaaggctgatagcagacatataaatgctagga 560

                                                                       
Query: 361 aattagcctgaaatctctgttagagaaaccagtgctctcaacaactgagccatctttaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattagcctgaaatctctgttagagaaaccagtgctctcaacaactgagccatctttaca 620

                                                                       
Query: 421 accctatttaacatgtttatataaaatacaattatactataacactgtaaatattataac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accctatttaacatgtttatataaaatacaattatactataacactgtaaatattataac 680

                                                                     
Query: 481 aatttatagcatcaaatgatgaatatagtaatagaatggatggtagaggcactagatt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatttatagcatcaaatgatgaatatagtaatagaatggatggtagaggcactagatt 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)