BAC Information

Click to search

BAC

Clone NameMSMg01-141K16
Chromosome16 (Build37)
Map Location 67,608,488 - 67,609,132
singlet/doubletsinglet
Overlap geneCadm2
Upstream gene9330155M09Rik
Downstream geneEG626609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141K16.T7 (MSMg01no141_k16.b1)MSMg01-141K16.TJ (MSMg01no141_k16.g1)
ACCAG346482AG346483
length1,2891,262
length of high quality
(start - end)
687 (88 - 774)645 (92 - 736)
definitionCHROMAT_FILE: MSMg01no141_k16.b1 PHD_FILE: MSMg01no141_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:20 2005CHROMAT_FILE: MSMg01no141_k16.g1 PHD_FILE: MSMg01no141_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTATCNTTNNNNNGGCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTCAAAACTAAGTAAATATTTTATTTCCTCTATATAT
AACAAAGATGAATGCAACAGACCATAAATATGTGAGGCTTCTCCATAACT
AATTCAATAGGATGATCCACATGATCTAATGTTAGAGACTGGGACTGGGG
AGCATTTCAGGGGCAAGATAAAAGTATAGCACAATGGATATGCCAACAAA
TATATGAGGATGACCATAGAGAAGACTCCTAGCAATGAATATGGATACAC
TAACCCAGCCAAAAAAAAAAAATCTTCTACCTACAGTTTGTCCTGTCTGC
AAGATATGCTGGGGTAAATGTGGCACAAAACTTGTAACAATGACCAACCA
ATTAGTCTTCCAAATTGACATCCATGCTAGGGGAGGAAGTCCAGGAACCA
GAGACTTGATAGCCCAGAGAGCTAAGGTAGAACCTAACATGAGTGGGAAA
AAAAAGTCAATGAGATGATTTTTAATGATACTCTGCTACATTCCTGATAA
GGCCAACTGCAAAGACCCACGAGCAGACATCAGGTGGATGTCAGGGAATC
CTGTTGTTGTAGTCAGAGGATCTAAGGACTCAAACAGAACACAGCCCACA
GGATCAGCTAATCAGGGCTCATATGAGCTCACAGAGACTGAATCTAACAT
CAGGGAGCCTGTAGAGTTTTGACTTAGGTCTTCTACCCATGTGTTAGGTT
GTGTAGCTTGATGTTCTTGTGGTACTCCTAACAGTGGGAGCAGGGGCTGC
CTCTGACTCTTTTGCCTGCTTTGAGGTCTTTTTCCTTCTATTTGGTTGCC
TTGAATAGCCATTTTATTAAGGGAAATTCCTCTTCTTACTCTAACTTTGC
AAGCCAATGTTGGGTTGATATATCTGGAAAGGCCTGTTTATTTTTCTGAA
TTGAAAATGGAATAGGAATGGTTTCTGGTAAATAAATAAAGGTTTCTTTT
TATCTTTTCTCCTTAGTTATTTTTTCCCTTTCTTTCCTTTTATTTTCTTT
TTTCCTTCTTCTTTTTTCCTATTTCTTTTTCTTTTTTTTTTTCTATCTTT
TCTTATCCTCAGTTTCCTGCCATTGTCTTTTCTTCCTATTTTCTCTTTTT
TTCNCTGTTTATTTTCTCCCCTCTCTTTTCTTTTCTTATTTCTTTCCTTA
TCATCCTTTCCTTATTTGTCCTCTTTATCTTACATCTCTACCTTTCTTCA
TCTTCATTCTCTCTTTTTACTTATACTCATTTTTGCTTG
NCCGATTCTTTTTNTAAGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTTAAAACTACAGTCCCAGT
GAAATGCCGCTTTTCTTTACCCATATTTTCTTTTCCCTTTTTTTTTTCAT
TTAAAAAATTCATTTTTCCTGGTGTATTTTAGGGTTGCTTTTTTTTTTGA
CTGTTTCGTGACTCAGTGTTTGAAAATAAGTTATTAACTAAGCTGAGTTA
ATGTTTACCAGAGGCCAGATGCTCCTCCCATTCCATCACGCTGTTGGAGA
AAATCCCATTGTAAATGAATGCTCCAAGTAGACTCAAGTTGCTCAGTTTA
CTAAGTATTCTTGTCACTTTGTGGAATTGATATTAAGAATTATATTCTCC
CGATGATTTTACTAGCACTGCAGCCTTGTTTGTATTAGAGTGAGCCGTAG
AACAAAAATCATCCACTGCTGTTTGGCTAGGGCTGATTCACTTTCCAGAC
ATGCAGGAAGAAAACCTGGTTTGGGAAGGAGTTTTTGCTTGAGTACTATA
CTCATTTACAAAAAGTATTTTTGATATGTTACTGATTTGTGTTTGTTAAG
ACAATAGCAATGGTATTGGTAAAGATGATATTGCAGTAGAATTGTCTTTA
AAGAAAGATTTTTGTCTAAGTAAAATCCATACCAGATAATTTTCTGTCTG
CTTGTTTATTTTTATTTGGCTGTAGATATATGATTGATTAGGCAATATTA
ATGATGTTTTAACGCTATCATTTATTTCATTCACTTACTTATCCTAGTTA
AAAAGGAGGCATTAAAGCATGAAAAATTTATTGTTCGGAGTTCTTAAAAT
AAATGACAGTGAAGTTAATTTTAAAATTTGTCTAATTTTTCCCATTTTTT
TGGTTAACTTTAAAAATAATTTTCTTGAATGTAATTGTATTATCTTGAAG
GAAATGCCTTATACTTTGTTCCGGACCATATATTTAGTTTTAATGTATTC
TTGCAAATCCTTAAAAATTTTGTTGTTTTTCCTTACAATAACTATATCTT
TTCTTTTTTTTTATTAAATTTCTCTCCATGTAAGTTTTTATATTTCACTC
CTTTATTATTTTCTTATATATACTTCTCTCTACCATATACCATTCATTTA
TGTTTATCTTTATCTACCTACCTACCTTCTCAATTTATAATCTTTCCTCA
ATATATTTATTTTCTCTTTTATTAAATTCTTTTCTTTTCTTTTCTCTTNT
TACTATCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_k16.g1 MSMg01no141_k16.g1 CHROMAT_FILE:
MSMg01no141_k16.g1 PHD_FILE: MSMg01no141_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:20 2005
         (645 letters)



>mm_chr16_67608288_67609332
          Length = 1045

 Score = 1164 bits (602), Expect = 0.0
 Identities = 635/646 (98%), Gaps = 2/646 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcccagtgaaatgccgcttttctttacccatattttcttttcccttttttttttcatt 60
           |||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||
Sbjct: 845 agtcccagtgaaatgccgcttttctttacagacattttcttttcccttttttttttcatt 786

                                                                       
Query: 61  taaaaaattcatttttcctggtgtattttagggttgcttttttttttgactgtttcgtga 120
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 785 taaaaaattcatttttcctggtgtattttagggttgc-tttttttttgactgtttcatga 727

                                                                       
Query: 121 ctcagtgtttgaaaataagttattaactaagctgagttaatgtttaccagaggccagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ctcagtgtttgaaaataagttattaactaagctgagttaatgtttaccagaggccagatg 667

                                                                       
Query: 181 ctcctcccattccatcacgctgttggagaaaatcccattgtaaatgaatgctccaagtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctcctcccattccatcacgctgttggagaaaatcccattgtaaatgaatgctccaagtag 607

                                                                       
Query: 241 actcaagttgctcagtttactaagtattcttgtcactttgtggaattgatattaagaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 606 actcaagttgctcagtttactaagtattcttgtcactttgtggaattgatattaataatt 547

                                                                       
Query: 301 atattctcccgatgattttactagcactgcagccttgtttgtattagagtgagccgtaga 360
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 546 atattctcccgatgattttactagtactgcagccttgtttgtattagagtgagcagtaga 487

                                                                       
Query: 361 acaaaaatcatccactgctgtttggctagggctgattcactttccagacatgcaggaaga 420
           ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 486 acaaaaaacatccactgctgtttggctagggcggattcactttccagacatgcaggaaga 427

                                                                       
Query: 421 aaacctggtttgggaaggagtttttgcttgagtactatactcatttacaaaaagtatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaacctggtttgggaaggagtttttgcttgagtactatactcatttacaaaaagtatttt 367

                                                                       
Query: 481 tgatatgttactgatttgtgtttgttaagacaatagcaatggtattggtaaagatgatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgatatgttactgatttgtgtttgttaagacaatagcaatggtattggtaaagatgatat 307

                                                                       
Query: 541 tgcagtagaattgtctttaaagaaaga-tttttgtctaagtaaaatccataccagataat 599
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 306 tgcagtagaattgtctttaaagaaagattttttgtctaagtaaaatccataccagataat 247

                                                         
Query: 600 tttctgtctgcttgtttatttttatttggctgtagatatatgattg 645
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttctgtctgcttgtttatttttatttggctgtagatatatgattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)