BAC Information

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BAC

Clone NameMSMg01-144A17
Chromosome16 (Build37)
Map Location 44,661,976 - 44,662,429
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731
Downstream geneBC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144A17.T7 (MSMg01no144_a17.b1)MSMg01-144A17.TJ (MSMg01no144_a17.g1)
ACCAG348220AG348221
length754812
length of high quality
(start - end)		502 (45 - 546)283 (78 - 360)
definitionCHROMAT_FILE: MSMg01no144_a17.b1 PHD_FILE: MSMg01no144_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:46 2005CHROMAT_FILE: MSMg01no144_a17.g1 PHD_FILE: MSMg01no144_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTTTGAGACCCATGGTAGACTCAGGCTATGAGCTTTCGCGTTTA
TAATGATCTGTCCTAGCCACTGGCTATTGATACGCCACAGAGAAGATTAA
AGAACCTGTTCTGAGAAAGAAAGGAAAGCAGAGATTGGGGTTTTGGGATT
CTCGGGGAACAGAATGTGTCAGAAAGAGACCAAGAATCCAGAAGATGCAG
CATTAATTTAGTTGCACTGGGGGTCCTTCCATTCCCAAGCACACTTTTTT
CTCTACAGTGGTGACACAGAGGAAGGTAGCTTTGATTTATCCACTCTTTG
TACAGTATGAGTGTTTAGCATAATATGGATGGCATCCGAGAGGGAGAGAT
CAATGAACCAACACTCCCCGCCCTAAGGAATGAGAGGCAGCAAACACGTG
TATGACATCAAGAAGTAATGAATGCTACAAACTGTCTCTAAGAAGCATCA
GATAGTTCACAGACCTAAGGGCTTGGGGTAGAGATATGAGGTTGGAGGAT
GCTTTCTCTTCTTTCCCTCTTTCCCTTTTTCCTCATTACCATTTTCCCTC
TTTCTTTCCTCCTTCTTGTTTCTCTTATTTCTCTTCCCCATCCTTTCCCT
CATGTTTCTCTTTTCCTCCCCTTTCCTTCTCCTTTTTCTCTTTTACCCCT
ATTTCCCCTTCCTCTCTTCCCTTCTTCCTTTTTTTCGCTTTGCCCTCCCC
CCAT

CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCCTGACTTCCTTGGTGATG
AACAGCAGCGTGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTTG
CTTCTTGGTCATGATGTTTTGTCCAGGAATAGAAACCCTGACTAAGACAA
ATTGGTACCAGGAGTGGGGTATTCCTGTGACAACCTGACCATGTTTTGGG
GAGGACTGTGGAAGAACTTTGGAACTTTGGGTCAGAAGATCCATTCGGTG
TTAAGAGCTCTGTAAGATGTTGTATAGGAGCTTGGAAGATAATGTTGAGA
ACAGTGCATAAAATGCAGGCCTGCCTTGTGAAATTCCAGAGTCAAAATTA
CAGATTCTTTTCAGCCCCCCCGCTTCTTTTGCATTGCTATTATTCCATAT
TTTCGCTTCACTTGTTCTTCGATAGAATCCCCTTACGCTTGCCCTCTAAT
TTTCTTACCTACCACTATCTTCTTCCTTTGTCACTACTTGCCCACCACCG
TCCGACGTATTCCCTCTTTTTTTATTTCCCCCCTTTTTTCCTATTCCCCA
TCCTTTCCCCCTTTCTTTTTTTATCCCATTCTTTTTTTTCTTTTCATTCC
CTTCTTTTCACCATCTTCTCTTTCTTTTTTTTCTTCCCTCTTTCGCTCAC
TTTGTTCTCTTTCTTCGAGCTTCCTTTCGTTCTCTTTTTTTTCACCTCCC
TTTTCATTCTTTCTATACCCTTCTCTCTCCCATCTCCCTTCTCTTTCTTC
CGCCCCGCCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_a17.b1 MSMg01no144_a17.b1 CHROMAT_FILE:
MSMg01no144_a17.b1 PHD_FILE: MSMg01no144_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:46 2005
         (502 letters)



>mm_chr16_44661528_44662429
          Length = 902

 Score =  642 bits (332), Expect = 0.0
 Identities = 419/454 (92%), Gaps = 11/454 (2%)
 Strand = Plus / Minus

                                                                       
Query: 60  tgatctgtcctagccactggctattgatacgccacagagaagattaaagaacctgttctg 119
           |||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||
Sbjct: 902 tgatctgtcctagccactggctattgatactccactgagaagataaaagaacctgttctg 843

                                                                       
Query: 120 agaaagaaaggaaagcagagattggggttt-tgggattctcggggaacagaatgtgtcag 178
           ||||||||||||||||||||||||||||||  ||||||| |||||||||||| |||||||
Sbjct: 842 agaaagaaaggaaagcagagattggggtttgggggattcgcggggaacagaaagtgtcag 783

                                                                       
Query: 179 aaagagaccaagaatccagaagatgcagcattaatttagttgcactgggggtccttccat 238
           |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
Sbjct: 782 aaagagaccaagaatccagacgatgcagcattaatttagttgaactgggggtccttccct 723

                                                                       
Query: 239 tccc----------aagcacacttttttctctacagtggtgacacagaggaaggtagctt 288
           ||||          ||| | |||||||||||| |||||||||||||||| ||||||| ||
Sbjct: 722 tcccatggtatttaaagtatacttttttctcttcagtggtgacacagagaaaggtagttt 663

                                                                       
Query: 289 tgatttatccactctttgtacagtatgagtgtttagcataatatggatggcatccgagag 348
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 662 ttatttatccactctttgtacagtatgagtgtttagcataatatggacggcatccgagag 603

                                                                       
Query: 349 ggagagatcaatgaaccaacactccccgccctaaggaatgagaggcagcaaacacgtgta 408
           ||||||||||||||||||| |||| | | |||||||||||||||||| |||||| |||||
Sbjct: 602 ggagagatcaatgaaccaatactctctgtcctaaggaatgagaggcaacaaacatgtgta 543

                                                                       
Query: 409 tgacatcaagaagtaatgaatgctacaaactgtctctaagaagcatcagatagttcacag 468
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 542 tgacatcaagaagtaatgaatgctacaaactgtctctaagaagtaccagatagttcacag 483

                                             
Query: 469 acctaagggcttggggtagagatatgaggttgga 502
           ||||||||||||||||||||||||||||||||||
Sbjct: 482 acctaagggcttggggtagagatatgaggttgga 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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