BAC Information

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BAC

Clone NameMSMg01-144J01
Chromosome16 (Build37)
Map Location 10,545,769 - 10,546,290
singlet/doubletsinglet
Overlap gene4932416N17Rik
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi
Downstream geneSocs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144J01.T7 (MSMg01no144_j01.b1)MSMg01-144J01.TJ (MSMg01no144_j01.g1)
ACCAG348606AG348607
length695701
length of high quality
(start - end)
521 (80 - 600)507 (81 - 587)
definitionCHROMAT_FILE: MSMg01no144_j01.b1 PHD_FILE: MSMg01no144_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:25 2005CHROMAT_FILE: MSMg01no144_j01.g1 PHD_FILE: MSMg01no144_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCNNCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGCT
GCGCGGAATTCCTTCTGAATTACTTGAAATCTTTTAATCAATGTTCTTTT
TAGAGCACTTGTACATGTTCTGTGCGTTTTCTTCATTCTCTTATCCAACC
AATCCTAAAATAACCACAAAAAGTGGTACTGTCACTCTATTCGTTTTACA
GTGAAGGAAACTGAAGCCTAAATGCATACTGTTAACTAAAATCGAATCCA
GATCTGGCCGGGTCAATGGCCTCGTAACTATGCAGTCCAAGAAGTGCTAC
CCCAAGAAGCCCAGTGGCCACTGTCCGTCCCCGGGACATCAAGACAACTC
CAGCCCACAAAACGAAAACTCAACGATGCCCTTACTTTTCAGGTTAGGTG
TCTGGAGACTGAAAAATCACGCGACTTGTCCAAGGTCACACACAGAGCCA
GAAGTGAAAGAGTCAGGTTTCAAAGCCAGGTGCCCTGACTCCAAAGCCTT
GCGGATAACCAACATACAACCCTCCCGCGGCACCCCTGTCTTCCTCGCAC
CTCCGAGCCCCGCAAGCCAAGCCCGCGTCTGGGCGTCCGCGCCCGGCCCC
GCGTCCTTCCCGCCGCGCGCCCCGCACACTCACTTCAGGTGGTCCAAGGA
GTGTATGTTGCGGGAGGACTTGCTGTGTCCCCCGCCCACCCAGCT
CCCCCCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACATGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAAGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGATATAGTACTACTGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAAAAGGACGGCCGGCTCCACTATGTTCATAGCAGCCTTACTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCGCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCAGCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT
GATAAGTGGATATTACCCCAAAACCTAGGATACCCAAGATATAAGATACT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_j01.b1 MSMg01no144_j01.b1 CHROMAT_FILE:
MSMg01no144_j01.b1 PHD_FILE: MSMg01no144_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:25 2005
         (521 letters)



>mm_chr16_10545652_10546572
          Length = 921

 Score =  978 bits (506), Expect = 0.0
 Identities = 518/522 (99%), Gaps = 1/522 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttaatcaatgttctttttagagcacttgtacatgttctgtgcgttttcttcattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tcttttaatcaatgttctttttagagcacttgtacatgttctgtgcgttttcttcattct 580

                                                                       
Query: 61  cttatccaaccaatcct-aaaataaccacaaaaagtggtactgtcactctattcgtttta 119
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cttatccaaccaatcctaaaaataaccacaaaaagtggtactgtcactctattcgtttta 520

                                                                       
Query: 120 cagtgaaggaaactgaagcctaaatgcatactgttaactaaaatcgaatccagatctggc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cagtgaaggaaactgaagcctaaatgcatactgttaactaaaatcgaatccagatctggc 460

                                                                       
Query: 180 cgggtcaatggcctcgtaactatgcagtccaagaagtgctaccccaagaagcccagtggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cgggtcaatggcctcgtaactatgcagtccaagaagtgctaccccaagaagcccagtggc 400

                                                                       
Query: 240 cactgtccgtccccgggacatcaagacaactccagcccacaaaacgaaaactcaacgatg 299
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cactgtctgtccccgggacatcaagacaactccagcccacaaaacgaaaactcaacgatg 340

                                                                       
Query: 300 cccttacttttcaggttaggtgtctggagactgaaaaatcacgcgacttgtccaaggtca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cccttacttttcaggttaggtgtctggagactgaaaaatcacgcgacttgtccaaggtca 280

                                                                       
Query: 360 cacacagagccagaagtgaaagagtcaggtttcaaagccaggtgccctgactccaaagcc 419
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 279 cacacagagccagaagtgaaagagtcagggttcgaagccaggtgccctgactccaaagcc 220

                                                                       
Query: 420 ttgcggataaccaacatacaaccctcccgcggcacccctgtcttcctcgcacctccgagc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttgcggataaccaacatacaaccctcccgcggcacccctgtcttcctcgcacctccgagc 160

                                                     
Query: 480 cccgcaagccaagcccgcgtctgggcgtccgcgcccggcccc 521
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 cccgcaagccaagcccgcgtctgggcgtccgcgcccggcccc 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)