BAC Information

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BAC

Clone NameMSMg01-145A16
Chromosome16 (Build37)
Map Location 53,856,505 - 53,856,839
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442, LOC100043449, LOC667927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145A16.T7 (MSMg01no145_a16.b1)MSMg01-145A16.TJ (MSMg01no145_a16.g1)
ACCAG348949AG348950
length708713
length of high quality
(start - end)
645 (44 - 688)508 (74 - 581)
definitionCHROMAT_FILE: MSMg01no145_a16.b1 PHD_FILE: MSMg01no145_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:01 2005CHROMAT_FILE: MSMg01no145_a16.g1 PHD_FILE: MSMg01no145_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAA
TTCCTGATCTTTCAAGACTTTTATCATGAATGGGTGTTGGATCTTGTCAA
ATGTTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGT
TTGTTTATATACTGGATTACATTGATGGATTTCCGTATATTGAACCATCC
CTGCATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGCTTTAA
TGTATTCTTGGATTCGGTTAGCAAGAATTTTATTGAGTATTTTTGCATCG
ATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATGTTTGTTGGATCTTT
CTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCATAAAATGAGTTGGGTA
AAGTACCTTCTACTTCTATTTTAAGAAATAGTTTGTGCAGAACTGGAATT
AGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCAATCTGGTCC
TGGGCTTTTTTTGGCTGGGAGACTATTAATGACTGCTTCTATTTCTTTAG
GGGATATGGGACTGTTTAGATCATATATTTGATCCTGATTTAACTTTGGT
ACCTGGTATCTGTCTAGAAATTTGTCCTTTTCGTCCAGGTTTTCCAGTTT
TGTTGAGTATAACCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTT
CAGGATCT
CGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATACCTACAGTTGCAAGTCTTATTAT
TGTGTCTCCTGCCCACACTGTGTCATCTTTTACTTTTAGAAGTTTTAATC
ATGTGTAGGTATGTGTGTCTACATGGGTTACTGTACTTCAGTGCTGCTGC
ATATGGAGGTCAAAGGATTAAATGTCCTTGAGCTGGAGACACAGTGAATG
GAAGCCACTGACTTGGTGATAGTAACCACACTCTAGTCCTCAAGAAGCAC
AGGAGGTGCTCTTAACCACAAAAGCTTCTCTCTATGCCCACTTGATACTC
ATTACAAACCATTTTAAAAGTATATACGTTATTGTTTGTGTGCATGTTTG
TATGTTGGTATATATTATATGGATGTATATTTGTATGCATGTGTGTTGCA
TAATCGCATATTCCTGACTCATCATATCTGTGAAGATCAAAGTACAACTT
TAAAGAGTTATTTCCCCCTTTTATATTGATATAAATACTCTGAATCAGTT
GCAGCAGCCAAACTTCTGCAGCTAACTCTTGAGCCATCTTGTAAGTCCTA
AATGAATAAATGAAAATTCTTAAATTAGTCCCACAATTTTTAAAAAAGAA
TTACTGGACCAATTCTTATACCCATACAAAAACACATATTGCATTATTCT
AATAACCTTATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_a16.g1 MSMg01no145_a16.g1 CHROMAT_FILE:
MSMg01no145_a16.g1 PHD_FILE: MSMg01no145_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:01 2005
         (508 letters)



>mm_chr16_53855932_53856839
          Length = 908

 Score =  540 bits (279), Expect = e-157
 Identities = 321/335 (95%)
 Strand = Plus / Minus

                                                                       
Query: 174 aatggaagccactgacttggtgatagtaaccacactctagtcctcaagaagcacaggagg 233
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |
Sbjct: 908 aatggaagccactgacttagtgatagtaaccacactctagtcctcaagaagcactgcaag 849

                                                                       
Query: 234 tgctcttaaccacaaaagcttctctctatgcccacttgatactcattacaaaccatttta 293
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 tgctcttaaccacaaaaacatctctctatgcccacttgatactcattacaaaccatttta 789

                                                                       
Query: 294 aaagtatatacgttattgtttgtgtgcatgtttgtatgttggtatatattatatggatgt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aaagtatatacgttattgtttgtgtgcatgtttgtatgttggtatatattatatggatgt 729

                                                                       
Query: 354 atatttgtatgcatgtgtgttgcataatcgcatattcctgactcatcatatctgtgaaga 413
           |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 728 atatttgtatgcatgtgttttgcataatcacatattcctgactcatcatatctgtgaaga 669

                                                                       
Query: 414 tcaaagtacaactttaaagagttatttcccccttttatattgatataaatactctgaatc 473
           ||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||
Sbjct: 668 tcaaagtacaactttaaagagttatttcctccttttatgctgatataaatactctgaatc 609

                                              
Query: 474 agttgcagcagccaaacttctgcagctaactcttg 508
           ||||||||||| ||| | |||||||||||||||||
Sbjct: 608 agttgcagcaggcaagcgtctgcagctaactcttg 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)