BAC Information

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BAC

Clone NameMSMg01-145L04
Chromosome16 (Build37)
Map Location 49,455,466 - 49,455,772
singlet/doubletsinglet
Overlap geneLOC628903
Upstream geneMorc1, Trat1, EG667501, Retnlb, Retnla, Retnlg, 2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818
Downstream geneIft57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145L04.T7 (MSMg01no145_l04.b1)MSMg01-145L04.TJ (MSMg01no145_l04.g1)
ACCAG349431AG349432
length709699
length of high quality
(start - end)		602 (44 - 645)563 (71 - 633)
definitionCHROMAT_FILE: MSMg01no145_l04.b1 PHD_FILE: MSMg01no145_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:52 2005CHROMAT_FILE: MSMg01no145_l04.g1 PHD_FILE: MSMg01no145_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAATCCGCGGA
ATTCTCAACTGTGGCATCTTGAATGTTTGAGAAGCACTTAAAAGAAATGT
TCAACATCCTTAGTCATCAGGGAAGTACAAATCAAAATGACCCTGAGATT
CCATCTTTCATCAAACAGAATGGCTAAGATAAACAACTTAAGTGACAGCA
CATGCTGGCAAGGATGTGGAGCAAGGGGAAAACTCCTCCATTGGTGGTGA
GAGTGAGACCTAATACAAACATTGTAAATCAATTTGGTGGTTTCTCAGAA
AACTGGGAATCTTTTTACTCCAAGACCCATCTATACCCAAAATATGCTAT
ACTGTACCACAAGGACATTTGCTCAACTATGTTCATAGCAGATTTATTTG
TAATAGTGAGACATTGAAAAGAACCTAGATGTCCCTCCACTGAAGAATGG
ATAAAAAATATGTAGTAAATTTACACAATGAAATACTACTCAACTATTAA
AAACAAAGACATCATGCAATTTGCAGGCAAATGGATGGAACTACAAAATA
TTGTGCTGAGTGAGGTAACACACTCCTAGAAAGACAATTATGGTATGTAC
TCACTCATAAGTTGATATTAGCTATAAAATACAGGATAACTAGGTTAAAA
TCCACAGAACCAAAAAAGCTGAGTAAACAGGTAGGGCCCAAGGGAGGATA
CTTGACCTA

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAAGAGACTCCTCTGGTCCTGAGATTTTC
TTTGCTCAGAGATTTATTGCTTTCCATTGCTTGTTATGAATCTGTCTTTA
TATCTTCCTGGTTCCATTCATGTATCTCTAGAAAATTTCCATGCCTTCTA
AATTTTCCAACTGATAGGAGTATGTGATCTTTCAAAGTGTTCCATAAAGA
TCATTTAGCTTTAAGTGATATCATTTGTAATATACACTGTTTCTAAATGC
ATTAATTTGGAAGGATCCTCCATTTTGTTAGTTGTGCCTACTATTTTGCC
AATCTTGTGTATCTTTCAAAGAAGCAACTTTTTTCCCAGTGATCCTTGAT
ACTGTTTTGCCCCCCGCTTTCTAAATTTGAGCTTTGAGTTTTATTATTTA
TATCCTTCTACTAATTTAGATAGCCCTTGCTTTTTCAAAACCTTAAGGTG
CAATCTTAACATTATTTGTGAATTCTCCGATTTCTTTAAAATTTTTTATT
TTATTTATGATCATGGGAGATGACATTTCTGTCACAATCATAGCTGGAGA
TGAGAGTATAACTTTATAGAGAAAGTTTCTCTTCTACCTTTACATGGGTT
CTAGGAATCAAACTCAGTTATTAGGTTTGGATAGCCAGGCAGCAAGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_l04.g1 MSMg01no145_l04.g1 CHROMAT_FILE:
MSMg01no145_l04.g1 PHD_FILE: MSMg01no145_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:52 2005
         (563 letters)



>mm_chr16_49455466_49456429
          Length = 964

 Score =  563 bits (291), Expect = e-164
 Identities = 303/307 (98%), Gaps = 2/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagag-actcctctggtcctgagattttctttgctcagagatttattgctttccattg 59
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 307 agaagagtactcctctggtcctgagattttctttgctcagagatttattgctttccatta 248

                                                                       
Query: 60  cttgttatgaatctgtctttatatcttcctggttccattcatgtatctctagaaaa-ttt 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 247 cttgttatgaatctgtctttatatcttcctggttccattcatgtatctctagaaaatttt 188

                                                                       
Query: 119 ccatgccttctaaattttccaactgataggagtatgtgatctttcaaagtgttccataaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ccatgccttctaaattttccaactgataggagtatgtgatctttcaaagtgttccataaa 128

                                                                       
Query: 179 gatcatttagctttaagtgatatcatttgtaatatacactgtttctaaatgcattaattt 238
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gatcatatagctttaagtgatatcatttgtaatatacactgtttctaaatgcattaattt 68

                                                                       
Query: 239 ggaaggatcctccattttgttagttgtgcctactattttgccaatcttgtgtatctttca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  ggaaggatcctccattttgttagttgtgcctactattttgccaatcttgtgtatctttca 8

                  
Query: 299 aagaagc 305
           |||||||
Sbjct: 7   aagaagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 964
Length adjustment: 10
Effective length of query: 553
Effective length of database: 954
Effective search space:   527562
Effective search space used:   527562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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