BAC Information

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BAC

Clone NameMSMg01-145N13
Chromosome16 (Build37)
Map Location 63,996,747 - 63,997,263
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540
Downstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145N13.T7 (MSMg01no145_n13.b1)MSMg01-145N13.TJ (MSMg01no145_n13.g1)
ACCAG349541AG349542
length698690
length of high quality
(start - end)
561 (49 - 609)519 (73 - 591)
definitionCHROMAT_FILE: MSMg01no145_n13.b1 PHD_FILE: MSMg01no145_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:03 2005CHROMAT_FILE: MSMg01no145_n13.g1 PHD_FILE: MSMg01no145_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAATGGCTCACGCCATAAGATCAAGAATTGATAAATGGGACC
TCATGAAACTGGAAAGTTTCCGTAAGGCAAAGGACATAGTCAATAAGACA
GATCGACAACCTTCAGATTGGGAAAAAACTTCACTAACCACACGTCTGAT
AGAGGGCTAATAGCCAAAATATATAAAGAACTCCAGAAGTTAATCACCAA
AAAAACCAAACAACTCAATCAAAAAATGGGGTATAGAACAAAACTGAGAA
TTCACAACCTGGAATCTCGAATGCCTGAGAAACACCTAAAGAAATGTTCA
AAGTCCTTAGTTGTTGCCTTAAGTCTCCAAACCAAATATACCCTTGCAAT
GAAAACACAACTCAATTAATATGCTGTGCACCTAGATTGGGCAGATCTAC
CACTAAATTACCATCTTCCACATCTATGAGTCCCCTTAGAACTTGTGGTT
TCTCCAGGCCAGGTGCTTCTGCTCCACTTTTCTTCTTCCTCCTCCTTCTC
TTCTGAGTTCTCTCTCTCTTCCATTTTCTCCTTCTCTCTTCCAAACTTCC
ATTCCACCTTCCCTTTATCTGCCCAATTATTAGCTCTCCTTTATTTTACA
AATTAAGGTGAGAAGAAGGTCAACCGGGAATCACCTGAGTGCTGACTC
NNCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGTATATTTCACCCTTGCCTCCCGCT
CTCCTGTTTGTCTCATGCAGCCAGAATTTCTCTTTTTACGGTCATTTTTT
TCCATGCTGTTATCTGTAGGGTATCTCTTCCTCTTTAGACTTTTCTGTCA
ACTTCATTGCTCTAGGACTTCTGTGTAAGACCACTGTTATTATTCAGGAC
ACGGTAGTTGGAAGGAATTTATATTTTTTACATGAAGGCATGTTTAATAT
GCTCACTTATGCTCACCAATTCCACTATCTGCATAAAATATATGTCACTA
TCTTTCACACATATTTCTAAAAATACCTATGAGATATACTAATAACCCAG
GTTTAAAAAGAACATCATCTATAATTTTAATTCAGTAGATGAGTGTCATG
CTGTTTCAAAACACCCTTGTCAATCTGAGCTTCTCCATCCTTTCAATCAG
TTCCTGACAACCAGATTTCTAAGAATGAGAAATATTAATGGCCTTTACAT
ATTGCGGAGGTATATTTGTTGCTTTCTAAACTGTTTAATGTATCCTTTAT
ATTATATACTTTGCTTATTTGTATTGCATTATATACGGTAGGAGACATCT
GGAAGGTGGGGTTGAAGGAAATGAAAGAACGTGATCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_n13.g1 MSMg01no145_n13.g1 CHROMAT_FILE:
MSMg01no145_n13.g1 PHD_FILE: MSMg01no145_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:03 2005
         (519 letters)



>mm_chr16_63996545_63997463
          Length = 919

 Score =  984 bits (509), Expect = 0.0
 Identities = 515/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgtatatttcacccttgcctcccgctctcctgtttgtctcatgcagccagaatttctctt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgtatatttcacccttgcctcccgctctcctgtttgtctcatgcagccagaatttctctt 262

                                                                       
Query: 63  tttacggtcatttttttccatgctgttatctgtagggtatctcttcctctttagactttt 122
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 263 tttacggtcatttttttccatgctgttatctgtagggtatcccttcctctttagactttt 322

                                                                       
Query: 123 ctgtcaacttcattgctctaggacttctgtgtaagaccactgttattattcaggacacgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgtcaacttcattgctctaggacttctgtgtaagaccactgttattattcaggacacgg 382

                                                                       
Query: 183 tagttggaaggaatttatattttttacatgaaggcatgtttaatatgctcacttatgctc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tagttggaaggaatttatattttttacatgaaggcatgtttaatatgctcacttatgctc 442

                                                                       
Query: 243 accaattccactatctgcataaaatatatgtcactatctttcacacatatttctaaaaat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 accaattccactatctgcataaaatatatgtcactatctttcacacatatttctaaaaat 502

                                                                       
Query: 303 acctatgagatatactaataacccaggtttaaaaagaacatcatctataattttaattca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acctatgagatatactaataacccaggtttaaaaagaacatcatctataattttaattca 562

                                                                       
Query: 363 gtagatgagtgtcatgctgtttcaaaacacccttgtcaatctgagcttctccatcctttc 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 563 gtagatgagtgtcatgctgtttcaaaacacccttgtcaatctgagcttctccatccttcc 622

                                                                       
Query: 423 aatcagttcctgacaaccagatttctaagaatgagaaatattaatggcctttacatattg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aatcagttcctgacaaccagatttctaagaatgagaaatattaatggcctttacatattg 682

                                                
Query: 483 cggaggtatatttgttgctttctaaactgtttaatgt 519
           |||||||||||||||||||||||||||||||||||||
Sbjct: 683 cggaggtatatttgttgctttctaaactgtttaatgt 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)