BAC Information

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BAC

Clone NameMSMg01-145N14
Chromosome16 (Build37)
Map Location 83,195,707 - 83,195,859
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145N14.T7 (MSMg01no145_n14.b1)MSMg01-145N14.TJ (MSMg01no145_n14.g1)
ACCAG349543AG349544
length701697
length of high quality
(start - end)
153 (435 - 587)---
definitionCHROMAT_FILE: MSMg01no145_n14.b1 PHD_FILE: MSMg01no145_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:03 2005CHROMAT_FILE: MSMg01no145_n14.g1 PHD_FILE: MSMg01no145_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCC
GCGGAATTCATATGAATTCCTTGACACTTTATAAACATAAAAATAAACTA
GAGTACTAAATAAAGAGACAATAAATACACCGAATGAAGTGGAAAAGAAG
AAAAAAATTTAGGCCTCAGAGAGCTACAAAAAGATTTTGCCTGGAAGTTA
TTTAAATCTATGATTATTTTCTCCAAAATCTTTTTTAAAGAGGGAGATTA
TTACAGAGAGAAGTGGAGATGGAGAAAAAAAACAAAACAAAACATGAAGT
ATGGTGACCAGAGTAAGGGGGAGCTTCTCTGAGAAGTTATAGGAAAAAAG
TATGACTAAAATATAGAGAATCAAAAAGATTAACCTTCCAGTAAAGTAAT
AGCTTCTTTTAAGTAACAGTTGCACACACCTCATAATTACTAAAGTTCTC
ACAGACTGTTCTTCAAAACCAGACTTTTTAGAAAGATCAGTTCCAGCATT
CCCAGACACTATCTAGCTTATTTCTGTCTTGACTCTTGACTTATTTTTCT
CAAGTACATGCTGGATGAAATAATCAAATATCCAAAGTTTTTCCTGAAAT
TGAGCATCGCTCATCATGCATTAAATTGAGAATTTCTTTCGCCTCTGTGA
CTAGAAGGACACAGAATAATTTTTCTGAAAACACTGAAGGCTTTAATATC
A
NAACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGATGATCTCCTGATCTAATAT
AGAACCCTAACATTATTGTGTTTATGTTCCTAAATTTTCAAGAAGCCAAT
ATTTTACTATTCATTACCTATAAATTATAAGTAATTGAACATTTTTTCGC
ATACATAAGTAGATAGATGATATATATGCTTTGAATTTGTGACTAACCTT
GCCTGATGTCAAACAAAGGTAAACTTATCTAGACCTACTTCCTTACATAC
AAGCTGATAGGTTAATATTTAGCATCTTCCCGAGGCCATATGCCTCACAA
TCTATTCAGAAATTATGCTTGACTTTGACGAGCACAAACTTCTGCGTTTA
CCATTAGTGTATCCTCCAGCCCCCCCGTTTATATTGCCAGATCCCTGATG
AACTATTTGCTTAAACATACTCATGACAATTTTATCATAGCTGTACTCGA
TATTTTATCAGAACAAATATTTCATTTACCTATTATGATTACTGAAACAT
TATAATTCCGTGACATATTCACTGAAAGATTGAAAATGCTAATACGAGCC
TTATGTTATGACTCCCTTCCACTGGAATGATTTCTCTAATCTGCGCGCCA
GGATAGAAAAATCTACATCTACCTGAACTTCTCTTTATCTGCTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_n14.b1 MSMg01no145_n14.b1 CHROMAT_FILE:
MSMg01no145_n14.b1 PHD_FILE: MSMg01no145_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:03 2005
         (153 letters)



>mm_chr16_83195507_83196059
          Length = 553

 Score =  288 bits (149), Expect = 9e-83
 Identities = 152/153 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattactaaagttctcacagactgttcttcaaaaccagactttttagaaagatcagttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattactaaagttctcacagactgttcttcaaaaccagactttttagaaagatcagttcc 260

                                                                       
Query: 61  agcattcccagacactatctagcttatttctgtcttgactcttgacttatttttctcaag 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacattcccagacactatctagcttatttctgtcttgactcttgacttatttttctcaag 320

                                            
Query: 121 tacatgctggatgaaataatcaaatatccaaag 153
           |||||||||||||||||||||||||||||||||
Sbjct: 321 tacatgctggatgaaataatcaaatatccaaag 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)