Query= MSMg01no145_p11.b1 MSMg01no145_p11.b1 CHROMAT_FILE:
MSMg01no145_p11.b1 PHD_FILE: MSMg01no145_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:12 2005
(526 letters)
>mm_chr16_28410466_28411389
Length = 924
Score = 928 bits (480), Expect = 0.0
Identities = 514/526 (97%), Gaps = 2/526 (0%)
Strand = Plus / Minus
Query: 1 tggaaacgcagggcggtcatttgtatgaactgtgatgtcaggcagctgtcaggtgtcacc 60
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 724 tggaaatgcagggcggtcatttgtatgaactgggatgtcaggcagctgtcaggtgtcacc 665
Query: 61 tctcccagataacgcacattgttcatttctttctggtggtaaaagatgtatctgtataaa 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 664 tctcccagataatgcacattgttcatttctttctggtggtaaaagatgtatctgtaaaaa 605
Query: 121 gagaactttaagagtaacaagtaacagatttttctccaggccaattatagaacactttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gagaactttaagagtaacaagtaacagatttttctccaggccaattatagaacactttcc 545
Query: 181 ctgtgctcagaggtgtctatgttccctcttttttttttttcttttttcattttattgtgt 240
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 544 ctgtgcacagaggtgtctatgttccctc--ttttttttttcttttttcattttattgtgt 487
Query: 241 ctgtgccaggaggccaaaagctgttttcaacttcagattaatgtttgccatttacttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctgtgccaggaggccaaaagctgttttcaacttcagattaatgtttgccatttacttctt 427
Query: 301 gactcttccttcatagtgttcttgggttgattgcagttaaggaagaacagagattaaact 360
| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 426 gcctcttccttcatagagttcttgggttgattgcagttaaggaagaagagagattaaact 367
Query: 361 ggcacattatacttggaaagacatttggtgattagtggggaatgtgcagcaaagatatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggcacattatacttggaaagacatttggtgattagtggggaatgtgcagcaaagatatca 307
Query: 421 ttccgcaagcccgtgtctggccgttattaaccctttgacttagctctaatttctagtttt 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 306 ttccgcaagcccgtgtctggccgttattaaccctttgacttagctctagtttctagtttt 247
Query: 481 cttccccagtttctttttttaaaaaatatgtacatttatatacccg 526
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 246 cttccccagtttcttttttaaaaaaatatgtacatttatatacccg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 924
Length adjustment: 10
Effective length of query: 516
Effective length of database: 914
Effective search space: 471624
Effective search space used: 471624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_p11.g1 MSMg01no145_p11.g1 CHROMAT_FILE:
MSMg01no145_p11.g1 PHD_FILE: MSMg01no145_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:12 2005
(560 letters)
>mm_chr16_28246938_28247901
Length = 964
Score = 1002 bits (518), Expect = 0.0
Identities = 551/564 (97%), Gaps = 4/564 (0%)
Strand = Plus / Plus
Query: 1 actgaagcagataatttgatatttccattgtgtttgctttactggattatctgtatgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaagcagataatttgatatttccattgtgtttgctttactggattatctgtatgata 260
Query: 61 agatgtggggtgtggaagaactgctgagccactctgtggatgtgtgctgtagatatgggc 120
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgtggggtgtggaaggaccgctgagccactctgtggatgtgtgctgtagatatgggc 320
Query: 121 ctagtcaggtcaaggacaccacagcttcagacccgtaggaaggtagcaaagtcttcaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagtcaggtcaaggacaccacagcttcagacccgtaggaaggtagcaaagtcttcaatg 380
Query: 181 ggctaggcccaaggaaatggcgaaggcttccagtctggtatgtgtgtgaatttcggcagt 240
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ggctaggcccaaggaaatggtgaaggcttctggtctggtatgtgtgtgaatttcggcaga 440
Query: 241 acagaaaatatctgatatagtgttctcggctcatatatgtgtggcctaagggctgctccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagaaaatatctgatatagtgttctcggctcatatatgtgtggcctaagggctgctccc 500
Query: 301 ttaacagagattagctaaacttgtctccttgatccagatatatacaatgaaacccaatct 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaacagagatcagctaaacttgtctccttgatccagatatatacaatgaaacccaatct 560
Query: 361 ccttgtttatctatatgcaataactgtctccaagttgaattgtatatgatgaacatgctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttgtttatctatatgcaataactgtctccaagttgaattgtatatgatgaacatgctg 620
Query: 421 aacttcctggatgtgatggtttttccatcagagcccagtcaactggacatcagctatttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacttcctggatgtgatggtttttccatcagagcccagtcaactggacatcagctatttc 680
Query: 481 tctctgtgtgtttgtctttctttcattccctcactgccccaggtcacatcttcc----cc 536
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 681 tctctgtgtgtttggctttctttcattccctcactgccccaggtcatatcttccttcccc 740
Query: 537 tggaaatgtgctggaaggagcacc 560
||||||||||||||||||||||||
Sbjct: 741 tggaaatgtgctggaaggagcacc 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 964
Length adjustment: 10
Effective length of query: 550
Effective length of database: 954
Effective search space: 524700
Effective search space used: 524700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
