BAC Information

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BAC

Clone NameMSMg01-146P13
Chromosome16 (Build37)
Map Location 16,555,087 - 16,555,401
singlet/doubletsinglet
Overlap geneFgd4
Upstream geneUbe2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743
Downstream geneOlfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146P13.T7 (MSMg01no146_p13.b1)MSMg01-146P13.TJ (MSMg01no146_p13.g1)
ACCAG350368AG350369
length1,1621,337
length of high quality
(start - end)
558 (141 - 698)280 (84 - 363)
definitionCHROMAT_FILE: MSMg01no146_p13.b1 PHD_FILE: MSMg01no146_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:24 2005CHROMAT_FILE: MSMg01no146_p13.g1 PHD_FILE: MSMg01no146_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGATTCTTTNNNATACAGTGGGCGCTAAGACTACTAAGGGAGAGGATCC
GCGGAATTCTAAATTATTAATAATGCTTATAAGAGAAATTTATGATAAAT
ATAAAAGTTTATAGGCCTTTTAAAATTGGGTAACCCCGATAAGCCTCTTT
AATTAGTGATTATAAGAGGCTATTTTGTGTTTTCACTAGAGATATATAGT
AATAAGAACCTTAATAAACTCCCTAATAATTGTGCTATTTTTATTTTCTT
TTCAGTCACATGGACATTCTATTTTTAGTTTTTGAAGAACCTTCATACTG
ATTTCCACAGCTGTTAACTTAACAATCCTACTAACACTGTGTAAGGCCCA
TCTCTCTCTTTTGAAGGCATCTGCCATTTATTTTCTTAAAGATAGCCATT
CTGAATGAAATATTTTTTTCCAATTTTTTATTAGATATTTTCTTTATTTA
CATTTCAAATGCTATCCTGAAAGTCCCCTATACCCTCCCCCCGCCCTGCT
TCCCTACCCACCCACTCCTACTTCTTGGCCCTGGCGTTCACCTGTACTGG
GGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATATCTG
ACTAGGCCATCTTCTGCTACATATGCTGTACTATTTTTAAAGTAGGGTGA
TTTGTTAAAAAAAACCAAAACAAAACTATCATTACCATTTGTAGTCTGAT
AAAAATTGCACCAGGTGACTATGGAACTAAATGGTTTGTGAAGTGCTTCA
CTATCTTAATACTGTGTTATTAAAATTTAGCTTACTCTGCAAAGATTATT
TTTAATATGTTTAGTTTATTGTTTATAGTAGGATTCCATGTTATTATGTC
TATTATTTTTTGTGTATGTTTGTACTATTATGCAGAAATTTTTTATTGGG
TTTTAATTATTCATTTATATATTATTTTTTTTCTTTATTGTAAATTATTG
TTTTTCGTTATTTAGTTTGTTTTTTTTTTTTTTTTTTTTTTTTCGATTGT
TTTTTTTTTTTTCATTATTTTTTTTTTTTTTTTATTTTTTATTTTTCTAT
TATTATTTTTTTTTCTTTTTTTTCTTTATCTATTTTTTTTTTTTCATCAT
TTTATTTATTTATATTTATTTTTTTTTTATTTCTTAATATTTCTATGTTT
TTTTATTTCTTT
CGTTGTCTTTTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTTTTAACTAAGCCCATCTGGTCCTG
GGTTGTTTTTGTGCCTTTGCGTTGGGAGACCCCCACTGACTGCTTCTATT
TCTTTAGGGATTATGGGACTGTTTTGTGGTTTATCTGATCCTGATATAAC
TTTGGCATTTGGTATCTATCTAAAGCATTGTCCATTTCTTCCAGATTTTC
CAATTTTGTTGAGTATAGACTTTTGTAGTAGGAACTGATGATTTTTTGAA
TTTCCTTGGTTTCTATTGTTACATCTCCTTTTTTATTTCTAATTTTATTA
ATTTGGATACTGTCTCTGTGCCTTTTCATTATTTTGTCTAAGTGTTTTTT
TTTTTTGTTGATTTCTTTATAGATCTTGTTTTTTGGTTTTGTTCCCCCCT
TTTTTTTTTTCTTTTTGTTTTTATTTTTTTTTTTTTTATTTTTTTTTTTT
ATTTATTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTATTCTTTTTTTT
TTTTTTTTTTTTTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTCTTTTT
TTTTTTTTTTATTCTTTTTTTTTTTTTTTTTTTCTTCATTTTTTTTTTTT
TATTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTT
TTTTTTTTTTTATTTTAATTTCTTTTTTTTTTTTTTTTTTTTCTTTTTTT
TATTTTTCTTTCATTTTATTTTATTTTTTATATATTTCATTTCTATTTTT
TTCTTTTATTTTTATTTTTATATTTATTTTTATTGTTTTTCTTTATTTTT
TATTATTTTTTCTTTTTTTTTTTTTCCTTTTTTTTTTTTTTATATTCTTA
TTTCATTTTTTTTCTTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTTTT
TCTTACTTTTTATTTTTTTTATTTTTTATTATTTCTTTTTTATTTTTTTT
TTTTTTTTTTCTTCTTATTTTTTTTTTATTTTATTTTATTTTTTATCTTA
ATTCTTTTTCATATATTTTATTTTTATTCTTATTTTCTTTTTTATTTTTT
TTTTATTTATGTACTTTTTATTATTTTTTTATTTTCTTTATTTTTCTATT
TTTATATCTTTTATTTTATTCTTTCTTATTATATTNTCTTTTATTTTGTT
GCTCTTATTTTATCGTCTCTATTTATTTTTATTTCTGTTCTCATTCCTCT
TTTTATCTTATTCGTCTATTATTATTTCATTTCTCTCTATATTATTTTTT
TATTTTTATTAATCTATTTTATTTATTATTCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_p13.b1 MSMg01no146_p13.b1 CHROMAT_FILE:
MSMg01no146_p13.b1 PHD_FILE: MSMg01no146_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:24 2005
         (558 letters)



>mm_chr16_16555087_16556044
          Length = 958

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagcctctttaattagtgattataagaggctattttgtgttttcactagagatatatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aagcctctttaattagtgattataagaggctattttgtgttttcactagagatatatagt 256

                                                                       
Query: 61  aataagaaccttaataaactccctaataattgtgctatttttattttcttttcagtcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aataagaaccttaataaactccctaataattgtgctatttttattttcttttcagtcaca 196

                                                                       
Query: 121 tggacattctatttttagtttttgaagaaccttcatactgatttccacagctgttaactt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 195 tggacattctatttttagtttttgaagaaccttcatactgatttccacagttgttaactt 136

                                                                       
Query: 181 aacaatcctactaacactgtgtaaggcccatctctctcttttgaaggcatctgccattta 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 135 aacaatcctactaacactgtgtaaggcccatctctctctcttgaaggcatctgccattta 76

                                                                       
Query: 241 ttttcttaaagatagccattctgaatgaaatatttttttccaattttttattagatattt 300
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 75  ttttcttaaagatagtcattctgaatgaaatatttttttccaa-tttttattagatattt 17

                           
Query: 301 tctttatttacatttc 316
           ||||||||||||||||
Sbjct: 16  tctttatttacatttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)