BAC Information

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BAC

Clone NameMSMg01-147F18
Chromosome16 (Build37)
Map Location 74,838,413 - 74,928,731
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042, D930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147F18.T7 (MSMg01no147_f18.b1)MSMg01-147F18.TJ (MSMg01no147_f18.g1)
ACCAG350651AG350652
length739739
length of high quality
(start - end)		684 (49 - 732)661 (79 - 739)
definitionCHROMAT_FILE: MSMg01no147_f18.b1 PHD_FILE: MSMg01no147_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:56 2005CHROMAT_FILE: MSMg01no147_f18.g1 PHD_FILE: MSMg01no147_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,928,052 - 74,928,731)(74,838,413 - 74,839,073)
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGAGACTAACGTCTTAAAGATTAGAATTTGAGTATTATTAA
TTTAATGCAGACGCTGATATTCACATTCAGACCACAGCAAGGGAACTATT
TCCATCTTATAAAAATGCATGTGTTCTGTTGGAACCCTCCCAATAAAACA
GATGTGATTATCAGAAAGCCTGTAAATTTTGATTATCCATTGAGTGGATA
CATATTTAAAATGTAAATTCTATAGAGATTCTAAAGAGTTATTAAATAAC
TCAACTAGCCCCAACCCAATTTATTCTCTCCATTATTCCACGACTAGATG
AGTCACCTGCAGTGCTGACTAGAGGCACCCAGTCATAAGAGGCATAAGGG
AAGAAACACATTTCAATTCCTGGACAGAATTCACTTCATGTTGTCATAGG
TTTGTAAATTGATGTTGGCTCTAAGGCTTTCTAAAATGTTAACACTCAAA
TCAGGTCTCAACATTAGTATGTATTAGTTTAAGTAGACTGCTTTCTTCAT
TCCATATAAATTATGTCACCTGCACTGAGTAAATGGAAATTATAATTGCT
TAAGAAAAAAGGCAAAGCGATATGGAATTGTATGGAGAAATTATTTTGAA
ATTGAATTTTCTTTAGGGAGTGCAGGGCTAAGTAAAAAGAATCATTGTGT
TGGCATGTTAGGTCTGTAAGAAGGCACTGAGACTGTGAN

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTCAGTGATCTGCACTTAAT
AATTAATGGGTATGACATACTTCAGATGAAATTTCTCAGCGTGAGTGGGA
GTGGAGAGTGGGCGGGTGCATGCTGCATTGTCTGTACATTGCAGGATAGA
TGAAGAAAGATGGAAGACAACACTTTAAAGGTATGATTTGGAAAACAATA
TCACCTCACATGAAAATGCTGCTGAAGGTTTCCTTAAATGTCATTTCACA
CACTGGGCTGTGGTGACGCATGCCTTTAATCTCAGCACTTAGGAGGCAGA
GGCAGGAGGATTTCTGAGTTCAAGACCAGCCTGATCTACAGAGTGAGATC
AGGACAGCCAAGGCTACAGGGACAAACCCTGTCTCAAAAAGTCATTTCAC
ATACTGAGGAGTTATTATATGACCACACATATATTAAATAAGGTAAATTC
AAACATGCAGGAAAATATGTACAATACTAGTGCTTATATTAAGTGGAGAA
ATCAGCAATAAACCCAAAGAAAAGCATAGAAATGCACTATAATAGAATTG
AAGTATATGGTTTCATACAGTTTTTATAAAACAGAGGTAAGGTAAGAAGA
TAAACTTTTTAGGAAATAATCCTAGGAAAAATTTTCCCATCTACAAGATT
AACCAGTCTTTCAGATTAATTTTGATGACTTTGTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_f18.b1 MSMg01no147_f18.b1 CHROMAT_FILE:
MSMg01no147_f18.b1 PHD_FILE: MSMg01no147_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:56 2005
         (684 letters)



>mm_chr16_74927848_74928931
          Length = 1084

 Score = 1284 bits (664), Expect = 0.0
 Identities = 676/680 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgagactaacgtcttaaagattagaatttgagtattattaatttaatgcagac 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gaattcctgagactaatgtcttaaagattagaatttgagtattattaatttaatgcagac 825

                                                                       
Query: 65  gctgatattcacattcagaccacagcaagggaactatttccatcttataaaaatgcatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gctgatattcacattcagaccacagcaagggaactatttccatcttataaaaatgcatgt 765

                                                                       
Query: 125 gttctgttggaaccctcccaataaaacagatgtgattatcagaaagcctgtaaattttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gttctgttggaaccctcccaataaaacagatgtgattatcagaaagcctgtaaattttga 705

                                                                       
Query: 185 ttatccattgagtggatacatatttaaaatgtaaattctatagagattctaaagagttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 704 ttatccattgagtggatacatatttaaaatgtaaattctatagagattctacagagttat 645

                                                                       
Query: 245 taaataactcaactagccccaacccaatttattctctccattattccacgactagatgag 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 644 taaataactcaactagccccaacccaatttattctctccattattccacgactaaatgag 585

                                                                       
Query: 305 tcacctgcagtgctgactagaggcacccagtcataagaggcataagggaagaaacacatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tcacctgcagtgctgactagaggcacccagtcataagaggcataagggaagaaacacatt 525

                                                                       
Query: 365 tcaattcctggacagaattcacttcatgttgtcataggtttgtaaattgatgttggctct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcaattcctggacagaattcacttcatgttgtcataggtttgtaaattgatgttggctct 465

                                                                       
Query: 425 aaggctttctaaaatgttaacactcaaatcaggtctcaacattagtatgtattagtttaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaggctttctaaaatgttaacactcaaatcaggtctcaacattagtatgtattagtttaa 405

                                                                       
Query: 485 gtagactgctttcttcattccatataaattatgtcacctgcactgagtaaatggaaatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtagactgctttcttcattccatataaattatgtcacctgcactgagtaaatggaaatta 345

                                                                       
Query: 545 taattgcttaagaaaaaaggcaaagcgatatggaattgtatggagaaattattttgaaat 604
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 344 taattgcttaagaaaaaaggcaaagcgatatggaattatatggagaaattattttgaaat 285

                                                                       
Query: 605 tgaattttctttagggagtgcagggctaagtaaaaagaatcattgtgttggcatgttagg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgaattttctttagggagtgcagggctaagtaaaaagaatcattgtgttggcatgttagg 225

                               
Query: 665 tctgtaagaaggcactgaga 684
           ||||||||||||||||||||
Sbjct: 224 tctgtaagaaggcactgaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no147_f18.g1 MSMg01no147_f18.g1 CHROMAT_FILE:
MSMg01no147_f18.g1 PHD_FILE: MSMg01no147_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:56 2005
         (661 letters)



>mm_chr16_74838213_74839273
          Length = 1061

 Score = 1232 bits (637), Expect = 0.0
 Identities = 655/661 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtcagtgatctgcacttaataattaatgggtatgacatacttcagatgaaatttctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtcagtgatctgcacttaataattaatgggtatgacatacttcagatgaaatttctca 260

                                                                       
Query: 61  gcgtgagtgggagtggagagtgggcgggtgcatgctgcattgtctgtacattgcaggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgtgagtgggagtggagagtgggcgggtgcatgctgcattgtctgtacattgcaggata 320

                                                                       
Query: 121 gatgaagaaagatggaagacaacactttaaaggtatgatttggaaaacaatatcacctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgaagaaagatggaagacaacactttaaaggtatgatttggaaaacaatatcacctca 380

                                                                       
Query: 181 catgaaaatgctgctgaaggtttccttaaatgtcatttcacacactgggctgtggtgacg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 catgaaaatgctgctgaaggtttccttaaatgtcatttcacacactgggctgtggtgatg 440

                                                                       
Query: 241 catgcctttaatctcagcacttaggaggcagaggcaggaggatttctgagttcaagacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgcctttaatctcagcacttaggaggcagaggcaggaggatttctgagttcaagacca 500

                                                                       
Query: 301 gcctgatctacagagtgagatcaggacagccaaggctacagggacaaaccctgtctcaaa 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 gcctgatctacagagtgagatcaggacagccaaggctacagggagaaaccctgtctcaaa 560

                                                                       
Query: 361 aagtcatttcacatactgaggagttattatatgaccacacatatattaaataaggtaaat 420
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 561 aagtcatttcacatactgaggagctattatataaccacacatatattaaataaggtaaat 620

                                                                       
Query: 421 tcaaacatgcaggaaaatatgtacaatactagtgcttatattaagtggagaaatcagcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaacatgcaggaaaatatgtacaatactagtgcttatattaagtggagaaatcagcaa 680

                                                                       
Query: 481 taaacccaaagaaaagcatagaaatgcactataatagaattgaagtatatggtttcatac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaacccaaagaaaagcatagaaatgcactataatagaattgaagtatatggtttcatac 740

                                                                       
Query: 541 agtttttataaaacagaggtaaggtaagaagataaactttttaggaaataatcctaggaa 600
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agttgttagaaaacagaggtaaggtaagaagataaactttttaggaaataatcctaggaa 800

                                                                       
Query: 601 aaattttcccatctacaagattaaccagtctttcagattaattttgatgactttgttcct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaattttcccatctacaagattaaccagtctttcagattaattttgatgactttgttcct 860

            
Query: 661 g 661
           |
Sbjct: 861 g 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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