BAC Information

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BAC

Clone NameMSMg01-147L24
Chromosome16 (Build37)
Map Location 17,155,207 - 17,337,461
singlet/doubletdoublet
Overlap geneUbe2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1
Upstream geneLOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik
Downstream geneSnap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147L24.T7 (MSMg01no147_l24.b1)MSMg01-147L24.TJ (MSMg01no147_l24.g1)
ACCAG350946AG350947
length810770
length of high quality
(start - end)
107 (45 - 151)209 (76 - 284)
definitionCHROMAT_FILE: MSMg01no147_l24.b1 PHD_FILE: MSMg01no147_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:25 2005CHROMAT_FILE: MSMg01no147_l24.g1 PHD_FILE: MSMg01no147_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,155,207 - 17,155,310)(17,337,253 - 17,337,461)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGACCAGACTGCTCTGCCTGGGCTTCCCTCGGTAGACTCCA
ACTGGTCACCTTTAAAGGAGCCCTACCTCACTCATGTGGGTGCCACACTA
CCTAGAGCCCTCATTCCTCATCTTCTGAAAGAGTCTCACTATGTATCATG
GCTGGCCTGTAACTTATTAAGTAATTCTGGCTATCCTTGAAATCACAGAG
TTCCTCTGACTCCGCCCCCGAGGTCTGGGACTATAGGTGTGCGTTAGTTC
ACCCAGCACTATTTATTTCTTTCACTTTGCCTCGCTATATATCTATCCAC
TTTTATTTCATTCCACATGCCCCCCAGGTTAGCCCATACCATTCTTCCAG
ACTTTATTTGGACTCCCTGCCTCCAGTTTGGCCTATTCTCTAGTGCTTCT
GCTCATATATTGCCTTACCCCCCTTCATACCTTGTCCCCTCCTTATTTCT
TATTCCTCTACATCAGCTAGCGTTGGTAGCGATTCTATTTTTTTGCAAGA
TTCTATTCTCTCCACGTATATCTCCTACCCTTTGTGTGCGTCTTTTCTCC
AATCCCCTCCACTTTTCTCGATTAAACTTTTTGCTCTTTAAACTTTTTAC
CTTCCCCCTCACATTTAACTATAACGGATTTCTCAACTTATTCCCATCAT
TTTGCTTGTCTCTGCACTGTTTCCCCCTCTTTTTTTTTTTATCCCCTTTC
CCTTTTTTTTCACCCTATCCGTCCCATATCAATATATTTCCACTTTCTCT
CACACACTTT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTGTAAAACACGGATTCCGATAG
CTCTAATACATGATGCTCACCAGATGGAAATCGAGTGAGTGTAAAATAAT
AATAGGGCTTAGTAGCTATCAGCTCATCATGTTTTTCCCTGTTCCTGAAT
TAACCTAGTGTCTTATTTTCCTTCATAAATTACCACCTCAATACAGTTCT
AAGCGTTGTCTTTCTGTCCTGTGAGTTTCCTTTGAGAATCATAACGCTGC
TTCTTACCTTTGAAGTATATGCTGTTCAGAATCAGCATCTGAGTAGCAGG
ATCTATATTCTCCAGAGCTTCTTTTATAAGGCCCTTGGTGAGTTTCAGAA
CGCGTTTGTTTGCCCTTGATATGACGGCAGGATCTGGTATTTTAGTCTCT
TGCCCCCTCATCTAGTACACCTCCCTACTATTCTTTTTTAATTCCTCCCG
TATGGAAAATTGCCTCCGAATATCATGGCCATTAACTGTATGATGTGTGT
ACCCCAATTTCCCTTTTTACCACACGATGGCTTCTTTTTTCGATAGATAT
TGTGAATGCCGCTAACCCTTTATTTGCTGTCTGCCATTGATCACGTTTAC
CGATTTTGTATTACTGCACCCGTATTCCTTCAGGGCCTCTCTTTTCTTTT
GATCTACCGTATTTATCTCTTCCCTGCCTCTTTACAAATGCCCCAACTTT
GTGCTTACGCCCTATGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_l24.b1 MSMg01no147_l24.b1 CHROMAT_FILE:
MSMg01no147_l24.b1 PHD_FILE: MSMg01no147_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:25 2005
         (107 letters)



>mm_chr16_17155004_17155510
          Length = 507

 Score =  178 bits (92), Expect = 9e-50
 Identities = 101/104 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcacctgaccagactgctctgcctgggcttccctcggtagactccaactggtc 63
           |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 204 ggaattctcacctgaagagactgctctgcctgggcttccctcggtagactccaactggcc 263

                                                       
Query: 64  acctttaaaggagccctacctcactcatgtgggtgccacactac 107
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acctttaaaggagccctacctcactcatgtgggtgccacactac 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 507
Length adjustment: 8
Effective length of query: 99
Effective length of database: 499
Effective search space:    49401
Effective search space used:    49401
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no147_l24.g1 MSMg01no147_l24.g1 CHROMAT_FILE:
MSMg01no147_l24.g1 PHD_FILE: MSMg01no147_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:25 2005
         (209 letters)



>mm_chr16_17337053_17337661
          Length = 609

 Score =  366 bits (189), Expect = e-106
 Identities = 204/209 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgtaaaacacggattccgatagctctaatacatgatgctcaccagatggaaatcgag 60
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 409 atctgtaaaacacggattccgatagctctaatacatgatgcccaccagatagaaatcgag 350

                                                                       
Query: 61  tgagtgtaaaataataatagggcttagtagctatcagctcatcatgtttttccctgttcc 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 349 tgagtgtaaaataataatagggcttagtagctatcagctcatcgtgtttttccctgtccc 290

                                                                       
Query: 121 tgaattaacctagtgtcttattttccttcataaattaccacctcaatacagttctaagcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 289 tgaattaacctagtgtcttattttccttcataaattaccacctcaatacagttctaagca 230

                                        
Query: 181 ttgtctttctgtcctgtgagtttcctttg 209
           |||||||||||||||||||||||||||||
Sbjct: 229 ttgtctttctgtcctgtgagtttcctttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)