BAC Information

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BAC

Clone NameMSMg01-147P18
Chromosome16 (Build37)
Map Location 78,551,202 - 78,551,850
singlet/doubletsinglet
Overlap geneD16Ertd472e
Upstream gene2810055G20Rik, LOC435483, LOC100039561, Cxadr, Btg3
Downstream geneLOC100039605, 4930570E03Rik, Chodl, Prss7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147P18.T7 (MSMg01no147_p18.b1)MSMg01-147P18.TJ (MSMg01no147_p18.g1)
ACCAG351114AG351115
length746745
length of high quality
(start - end)
625 (46 - 670)651 (76 - 726)
definitionCHROMAT_FILE: MSMg01no147_p18.b1 PHD_FILE: MSMg01no147_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:44 2005CHROMAT_FILE: MSMg01no147_p18.g1 PHD_FILE: MSMg01no147_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGAGAATCCGCG
GAATTCCAGCCTTATTCATTGGTGATCTGATAGAATGCATGGTACTGTTC
CGATCTTCTTGTGTCTCTGTTAAGGCTTGTTTTGTGTCTGATTATATGGT
CAGTTTTGGAGAAGGTAAATGAGGTGCTGAGAAGATATGTTCTCTTGTTT
TAGGGTTAATTGTTCTGTAGATATATGTTAAATCCTTTTGGTTCACAACT
TGTTAGTTTCACTGTGTTTCTCTTTCGCTTCTGTTTCCATGATCTGTCCA
TTGGTGAGAGTTGGGTGTTGAAATCTTCTACTATTATTGTGTGAGGATCA
ATGTGTGTTTTGAGCTTTAGTAACATTTCTTTTACAAATGTGGGTGCCCT
TGCATTTGGGGTAGAGATGCCCACAACTGAGAGATGATCTACTTGAATTT
CTCCTTCGATGAATATGAATGAAGTGTTCTTCCCCATCTCTTTTAATAAC
TTTTGGTTGAAAGTCTATTTTGTTGGATATTAGAATGGCTACTCCAGCTT
GTTTCTTGAAACCATTAGCTTGGAAAAAGTTTTTTTTCCAGCCTTTTAGT
CTAAGGTAGTGTCTGTTTTTGTTACGGAAGTGTGTTTCCTGTATGAACCA
AAATGCTGGGTCCTGTTTACATATCCAGCATGTTAGCTAGCCTATGTCTC
TTTACTGTCGAACAGAGTCCATTTCTATTGAGAGATATTAAAGATC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCGACCCTACAGGACCATCTACAG
CAAAAGTTGTAGGTTATACAAAGCATGTATCCAGGGTGTGGGGCTGATGG
GCTACCCGGTGTGGGATTTGGGGCCAGCTGATGAAGTCCTGGTGTTGGCT
AGCGTTACACTTTTATTCCTTCCTTGATAGCACTGAAACACAAATCTTCC
ACTATCTCGTTACTCACCAGACTTTCAACTTCAATTACCAAAACTACAAC
TTGAGCTTTTGAACTTAGGAGAGAATAAGGAATATAACATTTTATGGTCC
TTGAAATGTGTTTTAATGGTTTTTGTCCTTTAAACCTCGCACCTCAGTGG
GTCTCCTGGCTCCATTTTCACGCAAATTTAGATAAAAATCCTTCTGGCAG
GCATTCATTTAAAACTCCACATGCGTGACTTACCATCAGTATAGAGGGAG
CACTGTTTGACTTGAATACTATGTCTTGCATTATAAAAAATATAGGGCTA
TTTTGAAATACCCTTTGAATTTGAAAAATATATGCTATATTTTGAAAAGC
TTCAAAAAAAACCTGATAACTGTAAAAAGGGATTCAAAATATTTCCATTA
TTCTTAGTGTGTCACGAATACCTGTGAGTTAAATTTATACCCGCTAATGT
ATTTAGTGCTGTATGAGTGTTAATTGTGTGAGATTCCTTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_p18.g1 MSMg01no147_p18.g1 CHROMAT_FILE:
MSMg01no147_p18.g1 PHD_FILE: MSMg01no147_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:44 2005
         (651 letters)



>mm_chr16_78551002_78552050
          Length = 1049

 Score = 1181 bits (611), Expect = 0.0
 Identities = 641/651 (98%), Gaps = 2/651 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcgaccctacaggaccatctacagcaaaagttgtaggttatacaaagcatgtatccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 agcgaccctacaggaccatctacagcaaaagttgtaggttatacaaagcatgtatccagg 790

                                                                       
Query: 61  gtgtggggctgatgggctacccggtgtgggatttggggccagctgatgaagtcctggtgt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 789 gtgtggggctgatgggctacccggcgtgggatttggggccagctgatgaagtcctggtgt 730

                                                                       
Query: 121 tggctagcgttacacttttattccttccttgatagcactgaaacacaaatcttccactat 180
           | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 t-gctagcattacacttttattccttccttgatagcactgaaacacaaatcttccactat 671

                                                                       
Query: 181 ctcgttactcaccagactttcaacttcaattaccaaaactacaacttgagcttttgaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ctcgttactcaccagactttcaacttcaattaccaaaactacaacttgagcttttgaact 611

                                                                       
Query: 241 taggagagaataaggaatataacattttatggtccttgaaatgtgttttaatggtttttg 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 610 taggagagaataaggaatataacattttatggtccctgaaatgtgttttaatggtttttg 551

                                                                       
Query: 301 tcctttaaacctcgcacctcagtgggtctcctggctccattttcacgcaaatttagataa 360
           ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 550 tcctttaaacctcgcacctcagtgggtctcctggctctattttcatgcaaatttagataa 491

                                                                       
Query: 361 aaatccttctggcaggcattcatttaaaactccacatgcgtgacttaccatcagtataga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aaatccttctggcaggcattcatttaaaactccacatgcgtgacttaccatcagtataga 431

                                                                       
Query: 421 gggagcactgtttgacttgaatactatgtcttgcattataaaaaatatagggctattttg 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 430 gggagcactgattgacttgaatactatgtcttgcattataaaaaatataggactattttg 371

                                                                       
Query: 481 aaataccctttgaatttgaaaaatatatgctatattttgaaaagcttcaaaaaaaacctg 540
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 370 aaataccctttgaatttgaaaaatatatgctatattttgaaaagcttc-aaaaaaacctg 312

                                                                       
Query: 541 ataactgtaaaaagggattcaaaatatttccattattcttagtgtgtcacgaatacctgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ataactgtaaaaagggattcaaaatatttccattattcttagtgtgtcacgaatacctgt 252

                                                              
Query: 601 gagttaaatttatacccgctaatgtatttagtgctgtatgagtgttaattg 651
           ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 251 gagttaaatttatacccactaatgtatttagtgctgtatgagtgttaattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1049
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1039
Effective search space:   665999
Effective search space used:   665999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)