Query= MSMg01no148_b08.b1 MSMg01no148_b08.b1 CHROMAT_FILE:
MSMg01no148_b08.b1 PHD_FILE: MSMg01no148_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:52 2005
(636 letters)
>mm_chr16_51500794_51501831
Length = 1038
Score = 1141 bits (590), Expect = 0.0
Identities = 626/640 (97%), Gaps = 6/640 (0%)
Strand = Plus / Plus
Query: 1 ctgtctctcagat---cctttctctcaaaaaataacttctccttggtaaatgtgtttctt 57
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtctctcagataaa--tttctctcaaaaaataacttctccttggtaaatgtgtttctt 258
Query: 58 cttc-attatggctgtgaccaaatttctctcgagatatttattcccctgctattgttcag 116
|||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct: 259 cttcaattatggctgtgaccaaatttctctcaagatatttattcccctggtagtgttcag 318
Query: 117 aatttgcttcctatctttatttctgaatttagtattttctttctctttcattttccttga 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 319 aatttgcttcctatctttatttctgaatttagtattttctttctctttcattttccttaa 378
Query: 177 ctttcaatgctctgtaaattctggattatagaaagccttggttatttttcatcattgtat 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 379 ctttcaatgctctgtaaattctggattatagaaagccttggttatttttcatcattgttt 438
Query: 237 cctgtgttcattttctttgtgaccatgggaactcattaatcatcaattagttgcctactc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cctgtgttcattttctttgtgaccatgggaactcattaatcatcaattagttgcctactc 498
Query: 297 aattagacccatagatgatttcccaaggtttaatttattcttaggtttttaacttccaac 356
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aattagacctatagatgatttcccaaggtttaatttattcttaggtttttaacttccaac 558
Query: 357 ttttatgtgactcacctgctcatatcaaattttaaaacacctaaacttaaaatgattgaa 416
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttttatgtgattcacctgctcatatcaaattttaaaacacctaaacttaaaatgattgaa 618
Query: 417 aatatacacatttgaggctttacattcattaaatattcttaagtctgaaacaaaattact 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aatatacacatttgaggctttacattcattaaatattcttaagtctgaaacaaaattact 678
Query: 477 tcttctaactcaaatcctatgagtgtacccagacttatttccctacagtaattctttccc 536
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcttctaactcaaatcctatgaatgtacccagacttatttccctacagtaattctttccc 738
Query: 537 tgagtgtatccaagatttgattttgagattttgttactctattgatttactgtctttcta 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgagtgtatccaagatttgattttgagattttgttactctattgatttactgtctttcta 798
Query: 597 aatatgataataatctaacatcattccttcactttttaac 636
||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aatatgataataatctaacatcattccttcactttttaac 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1038
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1028
Effective search space: 643528
Effective search space used: 643528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_b08.g1 MSMg01no148_b08.g1 CHROMAT_FILE:
MSMg01no148_b08.g1 PHD_FILE: MSMg01no148_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:52 2005
(527 letters)
>mm_chr16_51575840_51576766
Length = 927
Score = 1011 bits (523), Expect = 0.0
Identities = 526/527 (99%)
Strand = Plus / Minus
Query: 1 acatactgaagaatatagtctggtatctattaacaaatttatttctatagtccttaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 acatactgaagaatatagtctggtatctattaacaaatttatttctatagtccttaaaat 668
Query: 61 ctcattttttattaaacattatagatttcttaaaataatgaatgagataaattggctgag 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ctcatttcttattaaacattatagatttcttaaaataatgaatgagataaattggctgag 608
Query: 121 caaacttcttgacatgtatccatttagtattttcttactcatgattaatgctttaataac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 caaacttcttgacatgtatccatttagtattttcttactcatgattaatgctttaataac 548
Query: 181 ttggtgattgtatatagatcaaatagaagtttgagtttttgagaagctctatgttgtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttggtgattgtatatagatcaaatagaagtttgagtttttgagaagctctatgttgtttt 488
Query: 241 taaaagcaataatccagtttgcttttctggatgacttttgaaaatctcaggagtagtttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 taaaagcaataatccagtttgcttttctggatgacttttgaaaatctcaggagtagtttc 428
Query: 301 aataagaacatggaactacatttaatcatcaagaaaataacataatataagataccatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aataagaacatggaactacatttaatcatcaagaaaataacataatataagataccatgc 368
Query: 361 cacttcagccagaactaccacactcaaggaaagaaactgctagaaagaatgaagggaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cacttcagccagaactaccacactcaaggaaagaaactgctagaaagaatgaagggaggg 308
Query: 421 caaagagttacaatatcatctttgtcagtatttggtagcatattgtgagaaaataagggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 caaagagttacaatatcatctttgtcagtatttggtagcatattgtgagaaaataagggt 248
Query: 481 ttcatatttcactgtggcctgtggatacctacagagcagactagcag 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttcatatttcactgtggcctgtggatacctacagagcagactagcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
