BAC Information

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BAC

Clone NameMSMg01-148K03
Chromosome16 (Build37)
Map Location 75,527,901 - 75,528,301
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148K03.T7 (MSMg01no148_k03.b1)MSMg01-148K03.TJ (MSMg01no148_k03.g1)
ACCAG351573AG351574
length716723
length of high quality
(start - end)
540 (46 - 585)651 (73 - 723)
definitionCHROMAT_FILE: MSMg01no148_k03.b1 PHD_FILE: MSMg01no148_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:35 2005CHROMAT_FILE: MSMg01no148_k03.g1 PHD_FILE: MSMg01no148_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTTATTAATACCTGCTTATTTCATACTCCTTTTTACTCACGTG
TTCAGTACAGTTATGAGTTCAATGATAGTAGGACATGAGTATTTTCAATT
TGAAGTTATGAAAATATTTACTATAAACATGTTCAAATCATCCTTTAGAG
AAATAGGCCATCGTTTCTCTAAGGTAAAATCTAGGAGAGGTGCTGGTGGA
CAGATGATATATATACAGTTAACTTTAAAAAAATTCTATTGTGTTTTAAA
TCAGCTGTGTCATTTTTTTCTTCTTTCATTCTAGTCAACAGTGTATGAAA
ATGTTACCAGCATCCTTGCCAGCAATCTCACTGTTTATTGTAGCCATAAT
AGTATACAGATTTCTCATTGCACATTTCATTGCAATTCCCTAATACTAAT
GAAGCTAGATAGTTCTCACTTCTTATGCACCACTAGTGTATTTTCAGTAT
GATGTTTTGAATTCATTTTGGACCATCATAAGCTTTTCTTTTATACATAG
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTCACTTCCCCCTT
TTTCCTCCCCCTCTCCTTTTCCCTTCTTTCCTCTCCCGCCCTCTTTTTTC
CTTTTTCTTTTCCCCTTTTTCCCTCCCCCCACCCTCTCTAAATTCCTTTT
TTTTCCTCTTCCCTCT
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAATAAAATGTCACGGTTTGAGTGTGGC
TATTCATGTGAATGATGTGTAAGTGTGTGTTTAGTTACAAAGAGATCCAT
GGTTTAGAAATCACTAGATTGAATAATGAAAGGGGTCGATGATGTGGTAA
TAGCCTTTTAGCTGCCTTATACCTTCCAGCTCCCAGTTCCCGTTTTTTTT
ACAGGTTAGAGTGAAGACCAGGAAAGGCAGGAGCTCTTGAAGCTGCTCTC
TGTATTACCTTCACAGTTAGACAAAGAGCGATGATTGTGCTCATTCTAGT
GCTTAGCTTACATTCTCTTATTCCGTACAGTCCCAGCTCTAAAGCCCGGA
AATGGTGCTCCCCATGCCGTGTAAGGCTTCCCACATCAATTAACTTACAA
CAATGTCTGCATTAATTAGCCTTTCCTCGCCTTGACACAAGCTAGGGTCA
CCTGGGAAGAGGGAAATTTGGCTGAGAAGATGACTGTTTAAGCAAGCTGT
AGAAAAATGTCTTTCTGGACAGGTTTTGCTAGGTTACATAAGAAAGCAAG
GTGAGTAAGCAGAGGCTAAGCTTAGTATGCATCATTCTTCCATGGCCTTT
GCTTCAGTTCCTGGCCCCAGCTTCTTGCCTTGAGTTCCTGCCTTGATTTT
CACTCCCGGTGGCCTGCGAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_k03.g1 MSMg01no148_k03.g1 CHROMAT_FILE:
MSMg01no148_k03.g1 PHD_FILE: MSMg01no148_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:36 2005
         (651 letters)



>mm_chr16_75527901_75528949
          Length = 1049

 Score =  708 bits (366), Expect = 0.0
 Identities = 393/404 (97%), Gaps = 6/404 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caataaaatgtcacggtttgagtgtggctattcatgtgaatgatgtgtaagtgtgtgttt 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 caataaaatgtcagggtttgagtgtggctattcatgtgaatgatgtgtaagtgtgtgttt 342

                                                                       
Query: 61  ag-ttacaaagagatccatggtttagaaatcactagattgaataatgaaaggggtcgatg 119
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgattacaaagagatccatggtttagaaatcactagattgaataatgaaaggggtcgatg 282

                                                                       
Query: 120 atgtggtaatagccttttagctgccttataccttccagctcccagttcccgtttttttta 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 281 atgtggtaatagccttttagctgccttataccttccagctcccagttcccg---ttttta 225

                                                                       
Query: 180 caggttagagtgaagaccaggaaaggcaggagctcttgaagctgctctctgtattacctt 239
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 caggttagagtcaagaccaggaaaggcaggagctcttgaagctgctctctgtattacctt 165

                                                                       
Query: 240 cacagttagacaa--agagcgatgattgtgctcattctagtgcttagcttacattctctt 297
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cacagttagacaaagagagcgatgattgtgctcattctagtgcttagcttacattctctt 105

                                                                       
Query: 298 attccgtacagtcccagctctaaagcccggaaatggtgctccccatgccgtgtaaggctt 357
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 104 attccgtacagtcccagctctaaagcccggaaatggtgctccccatggtgtgtaaggctt 45

                                                       
Query: 358 cccacatcaattaacttacaacaatgtctgcattaattagcctt 401
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  cccacatcaattaacttacaacaatgtctgcattaattagcctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1049
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1039
Effective search space:   665999
Effective search space used:   665999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)