BAC Information

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BAC

Clone NameMSMg01-148P02
Chromosome16 (Build37)
Map Location 69,762,248 - 69,762,801
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneSpeer2, EG664930, Gbe1, D16Ertd519e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148P02.T7 (MSMg01no148_p02.b1)MSMg01-148P02.TJ (MSMg01no148_p02.g1)
ACCAG351801AG351802
length707700
length of high quality
(start - end)
557 (44 - 600)430 (71 - 500)
definitionCHROMAT_FILE: MSMg01no148_p02.b1 PHD_FILE: MSMg01no148_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:01 2005CHROMAT_FILE: MSMg01no148_p02.g1 PHD_FILE: MSMg01no148_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCACAAAGGAACACTCCCACTCTATTCCTCCTAGAGCAGCAAGTATATTT
AGATAACATTTCTAGCTTTAAACATTGATTTATCACCTCCTATAATGATA
TATGTTATTTAAATAGCAGAATATACAAGTGTACTGTAAAATAATACATT
TAAGTGTCTTAATCAGGCAAAGTATAACGTATGATATAACACAAGGGATT
GTTCATGAAAAGCAAATTTAAGAACTCCAATACATGACACGTCATCTACT
GAGAAATTATCATGCATTTGGATAGAGATAATGCAAAATTTTCAACATGT
TTTTGTGAATGAGCAATGACAGTATTGAAACACAGAGCTATAGTAGCTAG
GGTACACTACTAGTTTTAACCACTCTCCATTGTCACCCTTGCAAACAATT
GTTATTTCAGATGACATTAGAAAATATGATAGTTATCAACAGAGAATCTG
TCTGTCTAATTTGTATATCATTGCCTTAAATTTCCTTGGTCCACCAAAAA
TGATCATATTGTCCATATGATGGAGGAAGACATGAATGACCTTATCCACA
CTCATTAGTGAGAGAAGTACATGTGAGGAATGAGCCATAGTTGATAATCA
CAAAGCCTGTGAAAAAATGAGCACTAACTATTTTCTTGAAAGTGCTGCAG
TTTCTTT
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATAGCGAAACACTATTGGCTTATTCAACA
TCAGCAGAAAAAGATATGTACGTGCTGGGTGTCAGAGTTCTGTGAGTTGT
TGACTCAGTTCAGATAGCCCTGTTATGTCCTCACATTCCTCTTTATCTTT
ATGGTCAAGCTGTTTCCAGAAATGCTTTAACTATGAGGCATACCTGGGTT
TGTTTTTCTTTATTCTCAGCACCAGGCAAGCCTCTAGGCTCACAAACAAC
CAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTGAAATTTTATCT
TTCTTTCACTTTGATCTATGTATCTATTTTTTTTCCATGGTATCTTCAAA
GCCTGAGATTCTCTCTTCCATCTATTTTATTCTGTTGGTGAAGCCTGCCT
CTGTGGTTTCAGTTCAAATTCCTAAACTTTTCATTTCCATAATTCCCAAA
AGATGCGTTTTCTTTATTGTTTTTTTTCAGATCTTGAACAGTTTATTAAT
TTCTTTCAAGCATTTGTATATTCTTCGCTTTCATTGGGGGTTTTATTAAT
TTCCTCCAGCTGCTTGCGTTTTCCTGGATTTCTTTAAGGAATTTACTTGT
TTTCTCTATAAGGAAATCTATTATCTCCATATAATTTGTGGTAAATTCTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_p02.b1 MSMg01no148_p02.b1 CHROMAT_FILE:
MSMg01no148_p02.b1 PHD_FILE: MSMg01no148_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:01 2005
         (557 letters)



>mm_chr16_69762045_69763001
          Length = 957

 Score = 1040 bits (538), Expect = 0.0
 Identities = 550/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcacaaaggaacactcccactctattcctcctagagcagcaagtatatttagataa 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaattcacaaaggaacacttccactctattcctcctagagcagcaagtatatttagataa 698

                                                                       
Query: 64  catttctagctttaaacattgatttatcacctcctataatgatatatgttatttaaatag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 catttctagctttaaacattgatttatcacctcctataatgatatatgttatttaaatag 638

                                                                       
Query: 124 cagaatatacaagtgtactgtaaaataatacatttaagtgtcttaatcaggcaaagtata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cagaatatacaagtgtactgtaaaataatacatttaagtgtcttaatcaggcaaagtata 578

                                                                       
Query: 184 acgtatgatataacacaagggattgttcatgaaaagcaaatttaagaactccaatacatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 acgtatgatataacacaagggattgttcatgaaaagcaaatttaagaactccaatacatg 518

                                                                       
Query: 244 acacgtcatctactgagaaattatcatgcatttggatagagataatgcaaaattttcaac 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 517 acacgtcatctactgagaaattatcatgcatttggttagagataatgcaaaattttcaac 458

                                                                       
Query: 304 atgtttttgtgaatgagcaatgacagtattgaaacacagagctatagtagctagggtaca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atgtttttgtgaatgagcaatgacagtattgaaacacagagctatagtagctagggtaca 398

                                                                       
Query: 364 ctactagttttaaccactctccattgtcacccttgcaaacaattgttatttcagatgaca 423
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctactagttttaaagactctccattgtcacccttgcaaacaattgttatttcagatgaca 338

                                                                       
Query: 424 ttagaaaatatgatagttatcaacagagaatctgtctgtctaatttgtatatcattgcct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttagaaaatatgatagttatcaacagagaatctgtctgtctaatttgtatatcattgcct 278

                                                                       
Query: 484 taaatttccttggtccaccaaaaatgatcatattgtccatatgatggaggaagacatgaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taaatttccttggtccaccaaaaatgatcatattgtccatatgatggaggaagacatgaa 218

                         
Query: 544 tgaccttatccaca 557
           ||||||||||||||
Sbjct: 217 tgaccttatccaca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)