BAC Information

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BAC

Clone NameMSMg01-149G04
Chromosome16 (Build37)
Map Location 25,765,583 - 25,766,061
singlet/doubletsinglet
Overlap genenone
Upstream geneLpp, 5430420C16Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149G04.T7 (MSMg01no149_g04.b1)MSMg01-149G04.TJ (MSMg01no149_g04.g1)
ACCAG352117AG352118
length692700
length of high quality
(start - end)
479 (68 - 546)460 (77 - 536)
definitionCHROMAT_FILE: MSMg01no149_g04.b1 PHD_FILE: MSMg01no149_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:38 2005CHROMAT_FILE: MSMg01no149_g04.g1 PHD_FILE: MSMg01no149_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGACCGCGGA
ATTCAATTAATTTCCGAATATACCTTTCTCTAGATCCCCTCTTTTGAACT
GAAAAGAATTGACAACTGTCAAAAATTATAGTTGAATATGAATTGTTAAC
TTCTACCTTAGTTCTGTTCCAATACCTCCTTATCTTTAGCTCGACATACA
CATATTTGGGTATGAATGGCAGTTACATAGACGGGGCCAAATTATAGCAG
GCCTCAGCAGCAGGCATGGCAAAACACTGAGTTTGTGCAGGATGCCAGTA
ATTAGTGTTCTGCTGTGTAAATTAGAAAGTAGAGACTCTAAGATGCCTAG
CCCCACTCAACTGCTGCACGGGTGTGTGGGGCTTTCCAAGGCTTAGTAGC
AGACTTTCTCGTTTCCATTATAGGTTAATTGCTAAATACTTTCAAAAGTC
TGCACATAAATTACTTTCCCCATCAATATAGTATTTTAATAAGTTGGGAA
TTCAGCCAATTCCTTTCTCACTACACAAGAAATACAACTCTATAATGTGC
ATGAGGAGGCATGTCGAATTCTTAAGGACAGAAATTGAAAAATTCATCCT
ATGGATTTTCTGAAGTTTGATATGGTCAAGAAATGGAATCATGATGTTTT
GGCCTTATTATTTACCAAAGAAAATTAAAGTGCCGATGTTAT
NCTCATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTATCTCTATACCCCATTT
TTAAATTGAGTTTTTGAGGGTTTCTTGTTTGTTTGTTTGTTTGTTTGTTT
TGAGTCTACTTTCTTGAGTTCTTTATATATTTTGGATATTAGCCCTCTAT
TAGATGGTGGTTATTAAAGATCTTTTCCCAGTCTGTAGGCTGCTGTTTTG
TCTTATTGACAGTGCCCTTTGCCTTCCAGAAACTTTGCAAGAGGTCCCAT
TTATCAATGGTTGATCTTAGAACCTGAGCCATTGGTATTCTGTTCAGGAA
ATTTTCTCCCATGCCAATGTATTCAAGGCTGTTTTTCACTTTCTCTTCTA
TTAGATTCAGTATATCTGGTTTTATATTGAGATCCTTAATCCATGGGGAA
TTGAGCTTTGTGCAGGGTGATAAATATGGATGTATTTGCATTCTCCTACA
TGCAGACAGCCAGTAGAACAGCACCATTCATTGAAGATGCTTTCTTTTTT
CCCTTGTATGGTTTTGGCTTCCTTGTCAAAAACAAGTGTCTCCAGATATG
TGTGTGTTTATTTCAGGGCCCTTAATTACATTCCATTGATCAACCTGGTC
TGTCTCCTGTACAATAACATGTGGCTTTTTTCCTTATTGTTCTGTCATAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_g04.b1 MSMg01no149_g04.b1 CHROMAT_FILE:
MSMg01no149_g04.b1 PHD_FILE: MSMg01no149_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:38 2005
         (479 letters)



>mm_chr16_25765383_25766261
          Length = 879

 Score =  888 bits (459), Expect = 0.0
 Identities = 474/479 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatacctttctctagatcccctcttttgaactgaaaagaattgacaactgtcaaaaatt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 atatacctttctctatatcccctcttttgaactgaaaagaattgacagctgtcaaaaatt 260

                                                                       
Query: 61  atagttgaatatgaattgttaacttctaccttagttctgttccaatacctccttatcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagttgaatatgaattgttaacttctaccttagttctgttccaatacctccttatcttt 320

                                                                       
Query: 121 agctcgacatacacatatttgggtatgaatggcagttacatagacggggccaaattatag 180
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 321 agctcgacatacacatatttgggtatgaatggcagttacgtagatggggccaaattatag 380

                                                                       
Query: 181 caggcctcagcagcaggcatggcaaaacactgagtttgtgcaggatgccagtaattagtg 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggcctcggcagcaggcatggcaaaacactgagtttgtgcaggatgccagtaattagtg 440

                                                                       
Query: 241 ttctgctgtgtaaattagaaagtagagactctaagatgcctagccccactcaactgctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgctgtgtaaattagaaagtagagactctaagatgcctagccccactcaactgctgc 500

                                                                       
Query: 301 acgggtgtgtggggctttccaaggcttagtagcagactttctcgtttccattataggtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgggtgtgtggggctttccaaggcttagtagcagactttctcgtttccattataggtta 560

                                                                       
Query: 361 attgctaaatactttcaaaagtctgcacataaattactttccccatcaatatagtatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attgctaaatactttcaaaagtctgcacataaattactttccccatcaatatagtatttt 620

                                                                      
Query: 421 aataagttgggaattcagccaattcctttctcactacacaagaaatacaactctataat 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aataagttgggaattcagccaattcctttctcactacacaagaaatacaactctataat 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)