BAC Information

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BAC

Clone NameMSMg01-149K11
Chromosome16 (Build37)
Map Location 19,139,246 - 19,139,579
singlet/doubletsinglet
Overlap geneIgl
Upstream geneRtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1
Downstream geneIgl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149K11.T7 (MSMg01no149_k11.b1)MSMg01-149K11.TJ (MSMg01no149_k11.g1)
ACCAG352312AG352313
length719709
length of high quality
(start - end)
514 (50 - 563)460 (74 - 533)
definitionCHROMAT_FILE: MSMg01no149_k11.b1 PHD_FILE: MSMg01no149_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:00 2005CHROMAT_FILE: MSMg01no149_k11.g1 PHD_FILE: MSMg01no149_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGCGGC
GGAATTCCTCTGGTTCCCGGGTTTTTTTAATGTGTGAGACACATAGCTCT
TTCCTTTGGTTTAAAATTATTTATTTTATATTTAATGTACTATAGGCAAC
ATGAAATTTTCCCACACATATTAGGAATTCTAATATTGTCTAATATAGGT
TTTTAATCCACATCCTTATGATTTCATGAATGGAATGATCCATCTTCTAT
GGCCTATATTTTAATATCCAATTTTATTAATTCAAGTTTCCTTTCTTCCT
TTTGCTAAGTTGGCCAAGGGTTTGTCAACAATGCTTATGTTTTCAAAAGT
CAACTTTGTTTATGTGACACTTTTTTTCATATCTATTTTATTATTTTATC
TATGTTTTCAATTATTTCACCCCATCTACTATTCTTAAAAAAAAATACTA
TTCTTTCCTGTGAAGACATTAAGTTACATCATTAACATATTAGTTTAGGA
TGTTTTAAAAATTTTGATATCTCTTAGCATTTTTAGATACCTTTTAAATT
TTACACACTACGTGCTACATTATTCAGACTGGATAAGTTGTATTTATGTG
TTCAGAAATATTTATTTATATACATATATATGTATACAAAATGAACGACC
CAGACATCTTTAGTTTGAAGGAGAACACAGAGTCATATATCCGAAGGATT
TAGAGGCAAACAGGTGAAC
CGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCCCTAAAACCATCTGGCTCAGGACT
TGTTTTCATTGGGAGACTTTTAATGACTTTTATTTCCTAAGGGCTTATAG
GACTATTCAGATAGTTTATGTGATCTTGATTTAGCTCTGTTAATTGGTAT
CTGTCTGTACAATCATCATTTTCATTTGGATTTTCCAATTTTGTGGATTG
CAGGCTTTTGAAATAAGATCCAATGTTTCTTAGAACTTCCTAATATCCAT
TGTTATCTCTCCCTTCTCATTTCTATTTTTGTTAATTTGGAAAGTGTCTC
TCTGTCTTTAATTATATAGCCTAAGAGATTGTATATCTTGTTGATTCTTT
CAAAGAACCAGCTCTTTTTTTTTGTTGATTGTTTTTATTGTTCTTTTTCT
TTCTAATTGAATGACTTCATCCTTGAGTTTGATTATATCTCACCATCTAC
AACTCCTGGGTGTGTTTGCTTCATTTTTTCCTAGAGCCTTCATACATACA
TTTGCTTCCTTACTAGGAGAGCTCTCCAATTCCTTTATGAGGGCTTTTAG
TGGTATGAATTTTCCTTTTAGTACTGCTTTCATAAGCGTTCAAAATTTGG
GTATGATGCGCCCTCATTTTTATTGAATTCTAGAACACTTTTCATTCCTT
TATTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_k11.b1 MSMg01no149_k11.b1 CHROMAT_FILE:
MSMg01no149_k11.b1 PHD_FILE: MSMg01no149_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:00 2005
         (514 letters)



>mm_chr16_19138665_19139579
          Length = 915

 Score =  630 bits (326), Expect = 0.0
 Identities = 332/334 (99%), Gaps = 1/334 (0%)
 Strand = Plus / Minus

                                                                       
Query: 181 atggaatgatccatcttctatggcctatattttaatatccaattttattaattcaagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 atggaatgatccatcttctatggcctatattttaatatccaattttattaattcaagttt 856

                                                                       
Query: 241 cctttcttccttttgctaagttggccaagggtttgtcaacaatgcttatgttttcaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 cctttcttccttttgctaagttggccaagggtttgtcaacaatgcttatgttttcaaaag 796

                                                                       
Query: 301 tcaactttgtttatgtgacactttttttcatatctattttattattttatctatgttttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tcaactttgtttatgtgacactttttttcatatctattttattattttatctatgttttc 736

                                                                       
Query: 361 aattatttcaccccatctactattcttaaaaaaaaatactattctttcctgtgaagacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aattatttcaccccatctactattcttaaaaaaaaatactattctttcctgtgaagacat 676

                                                                       
Query: 421 taagttacatcattaacatattagtttaggatgttttaaaaa-ttttgatatctcttagc 479
           ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 675 taacttacatcattaacatattagtttaggatgttttaaaaatttttgatatctcttagc 616

                                             
Query: 480 atttttagataccttttaaattttacacactacg 513
           ||||||||||||||||||||||||||||||||||
Sbjct: 615 atttttagataccttttaaattttacacactacg 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 915
Length adjustment: 10
Effective length of query: 504
Effective length of database: 905
Effective search space:   456120
Effective search space used:   456120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)