BAC Information

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BAC

Clone NameMSMg01-150J17
Chromosome16 (Build37)
Map Location 47,171,338 - 47,171,675
singlet/doubletsinglet
Overlap genenone
Upstream genePvrl3, LOC628757
Downstream geneLOC628776, EG667741, EG639644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150J17.T7 (MSMg01no150_j17.b1)MSMg01-150J17.TJ (MSMg01no150_j17.g1)
ACCAG352997AG352998
length722727
length of high quality
(start - end)
373 (43 - 415)338 (71 - 408)
definitionCHROMAT_FILE: MSMg01no150_j17.b1 PHD_FILE: MSMg01no150_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:12 2005CHROMAT_FILE: MSMg01no150_j17.g1 PHD_FILE: MSMg01no150_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGAGCACTACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAGGCTTGTACAACCACTCTGGAAATCAGACTGGGGTCCCTCAGAAAA
TTGGACATAGTACTACCAGAGGATCCATCAATATCTCTCCTGGGCATATA
TCCAGAACATGCCCCAACTGGTAAAAATGACACATGATCCACTATGTTAT
TAGCACCCTTATCCACACCAGTCATAAGCTGGACAGACCCCAGATGCCCC
TCAACAGACCACTGCATACGGAAAATGAGGTACATCTTTGCAAAGAAATA
CTAATACGCTATTGCGCCGAATGAATTCAACAAATTCCTGAGTTGGTGGA
CGCACCCGTAGAGTATCATCCCGAGTGAGGTAACACGTTCGCAAAATAAT
TCATATTATATGCACTCCCTGACCACCGATTATTAGCTCCTAACTTAAAA
TTACAAAGATGCAAAGAACATATCAAAATTCTCGTGACACTCTATAATAT
TGATTATTTCCCCCCCGACTTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATAAATTCATTGTTTTTAATAGCTGAGTA
GTACCCCATTATGTAAATGTGCCATATTTTCTGTATCCATTCCTCTGTTG
AGGGACATATGGGTTCTTTTCAGCTCCTGGCTATTATAAATAAGGCTGCT
ATGAACATAGTGGAGCATGTGTCCTTAGAAATAAGGTTTTTATAAACATC
TAGGAAGGAGAAATTAGTATTTTCACTCATTCTTTCTGGTATTGGGTTTT
TCTGTTATTCAGTGGTAAACTCATTGAACTTTCCTGCACTTCACTTTACT
TCAAACACAAATTTCAGTATGATTTTATATTATTATCTAATGGGTACATT
GTCCTTCCTCACCCCACGTTATCTTTGTTGAAATATGGTATGTTAAACCA
ATTGTTTAAACCATTCCTGGAGAAAAGGGTGTGGGTGGCTGTAGATTCTT
AGCTCTCATGCTAATCTGCTACTATCATTATTATCTTGATTCAGCTCCCT
ACGGAGCATATTAAAGCGAGCTTACCCATTTTGAATTCATTCTAAAATAC
GAGGAATAGCGCCATAAATTATTTTGGGTCTCTATTAAAACATTGTTTTA
AGTTTATTATTCCCCGACTTTATATTATTGATCCCAATGTTTCATCCTGT
TATTGGAACTGTAATTGCACCCGCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_j17.g1 MSMg01no150_j17.g1 CHROMAT_FILE:
MSMg01no150_j17.g1 PHD_FILE: MSMg01no150_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:12 2005
         (338 letters)



>mm_chr16_47171138_47171875
          Length = 738

 Score =  654 bits (338), Expect = 0.0
 Identities = 338/338 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaattcattgtttttaatagctgagtagtaccccattatgtaaatgtgccatatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaattcattgtttttaatagctgagtagtaccccattatgtaaatgtgccatatttt 260

                                                                       
Query: 61  ctgtatccattcctctgttgagggacatatgggttcttttcagctcctggctattataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtatccattcctctgttgagggacatatgggttcttttcagctcctggctattataaa 320

                                                                       
Query: 121 taaggctgctatgaacatagtggagcatgtgtccttagaaataaggtttttataaacatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaggctgctatgaacatagtggagcatgtgtccttagaaataaggtttttataaacatc 380

                                                                       
Query: 181 taggaaggagaaattagtattttcactcattctttctggtattgggtttttctgttattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggaaggagaaattagtattttcactcattctttctggtattgggtttttctgttattc 440

                                                                       
Query: 241 agtggtaaactcattgaactttcctgcacttcactttacttcaaacacaaatttcagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtggtaaactcattgaactttcctgcacttcactttacttcaaacacaaatttcagtat 500

                                                 
Query: 301 gattttatattattatctaatgggtacattgtccttcc 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gattttatattattatctaatgggtacattgtccttcc 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)