BAC Information

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BAC

Clone NameMSMg01-151I22
Chromosome16 (Build37)
Map Location 26,513,730 - 26,514,091
singlet/doubletsinglet
Overlap geneLOC100043057
Upstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16
Downstream geneIl1rap, Gm606, Ostn, Uts2d, Ccdc50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151I22.T7 (MSMg01no151_i22.b1)MSMg01-151I22.TJ (MSMg01no151_i22.g1)
ACCAG353690AG353691
length726755
length of high quality
(start - end)
367 (48 - 414)147 (78 - 224)
definitionCHROMAT_FILE: MSMg01no151_i22.b1 PHD_FILE: MSMg01no151_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:24 2005CHROMAT_FILE: MSMg01no151_i22.g1 PHD_FILE: MSMg01no151_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGATCCTAGACTGCAATACCCACCCTCAGGGGTGGCCCTTTAA
ATACAGGAATGTTCATAAGCCGTGCTTCCTATCATGGGATAAGGAGGCTA
GAATATGAGTAGTCATATCTGACTTTAAAAGCTACCTACTTCCATTTCAT
ATCAAAAGTCTACTAATATATTGACTAGGAGAGAGAGAGAAGAAATAGCC
CCTGAGAGAACTGACGATCACATTCTGAAGTAGACATTTATGAACTAGAG
ATAAGATCTGAAAAGTCTCAAATTATTGCTTAGGACTTGGTAGACTTGAA
GTAAACATTACCCTTTGTAGAAGACAACTTTTTCTTCTCTTTATTATTTA
TCTATCAATTTATTCCAACCANCCCACTTATGTTTACAATGATTTCAGCC
TAATCAGATTCGGTAATTTTAAGGCCCAGGTGTTAGGGCCATCTCTGCAT
GTTATTGAGGCAATGTGCTAGATATAATGTGTCCTTTTCTTCCTCACCCG
CTCCCCTTTCCCCTAGTTCTCCATTACGCATGCCCCCCGTCTCGCAGCTT
GTTCCCCCCTATTCCACTTTCCTTTTCCCCCCCACCCTTTTCCCCCCCCC
CGCCTCCCCCTCCCCCCGCTCTCTCACACTCACCTTTCATCCCCCCGACT
TCTCTCCTTTTCTCAACCCTCCCCCC
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAAGAACTGTCATGAACAAAC
ACTTGGGTACTTATAGAACAGAAAACAGGTTTTCAAAAATAAGAAACTAG
TTAGCACTAGGTGAATTTTTTTTTCCCAAATGGAGTAAACACTTGTGTGG
CTAGCAAACAGTCCTTCTACCTGGTCCATCAATTCCTCATTCTGAATTCG
GAATGAAGAAGTTAAATAGAAGAGCGGCTGTCAACCACATAATGGTTGCT
ATGGCAACCAAGCACAACATGTAAGTAATAAGCAGTACAAGAAATGACTC
TGGAATCCTGGATAGAAAATATGTATCTGAGAAAGAGAAAACCGTGGAAA
GGATGATGACAAAACCAACAAAACCCCACCTTTTTTTGGGGACGACTACC
CCTCAAAAGGAACCGTCTGAGGATACGACTGCCCAAGGCCATTCCCCGCT
TTGCACACGGGGTGGACCAACCGAAACAAGAAAACACGGCCAACCACCTG
GACAGAAAGGGGGAAAGGGCCGGGAAGGGGGAAAAACAGGGGAAAAGGGG
GAACCGGGGGAAACACAAAGGGGAAAAACTGGGGTTGAACCCCGTCCGCC
TTTTGGGGGGGACAAAAGGCAAAAAAAAAAAGCGGGCAGGCCCCCCACCC
ACACCACACCCGCCCCTACAACTGGGGGCCAAAAACAACCACCCAAACAC
CAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_i22.b1 MSMg01no151_i22.b1 CHROMAT_FILE:
MSMg01no151_i22.b1 PHD_FILE: MSMg01no151_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:24 2005
         (367 letters)



>mm_chr16_26513527_26514291
          Length = 765

 Score =  646 bits (334), Expect = 0.0
 Identities = 356/364 (97%), Gaps = 2/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagatcctagactgcaatacccaccctcaggggtggccctttaaatacaggaat 63
           ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 204 ggaattcggatcctagactgcaatacccaccctcaggggtggccctttaactacaagaat 263

                                                                       
Query: 64  gttcataagccgtgcttcctatcatgggataaggaggctagaatatgagtagtcatatct 123
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 gttcataagccgtgcttcctatcatgggataagggggctagaatatgagtagtcatatct 323

                                                                       
Query: 124 gactttaaaagctacctacttccatttcatatcaaaagtctactaatatattgactagga 183
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 gactttaaaagctacctacttccatttcatatcaaaggtctactaatatattgactagga 383

                                                                       
Query: 184 gagagagagaagaaatagcccctgagagaactgacgatcacattctgaagtagacattta 243
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 gagagaga--agaaatagcccctgagagaactgacgatcacattctgaagtagaccttta 441

                                                                       
Query: 244 tgaactagagataagatctgaaaagtctcaaattattgcttaggacttggtagacttgaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgaactagagataagatctgaaaagtctcaaattattgcttaggacttggtagacttgaa 501

                                                                       
Query: 304 gtaaacattaccctttgtagaagacaactttttcttctctttattatttatctatcaatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtaaacattaccctttgtagaagacaactttttcttctctttattatttatctatcaatt 561

               
Query: 364 tatt 367
           ||||
Sbjct: 562 tatt 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 765
Length adjustment: 9
Effective length of query: 358
Effective length of database: 756
Effective search space:   270648
Effective search space used:   270648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)