BAC Information

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BAC

Clone NameMSMg01-151N18
Chromosome16 (Build37)
Map Location 70,019,311 - 70,019,648
singlet/doubletsinglet
Overlap genenone
Upstream geneSpeer2
Downstream geneEG664930, Gbe1, D16Ertd519e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151N18.T7 (MSMg01no151_n18.b1)MSMg01-151N18.TJ (MSMg01no151_n18.g1)
ACCAG353905AG353906
length734750
length of high quality
(start - end)		349 (68 - 416)338 (76 - 413)
definitionCHROMAT_FILE: MSMg01no151_n18.b1 PHD_FILE: MSMg01no151_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:47 2005CHROMAT_FILE: MSMg01no151_n18.g1 PHD_FILE: MSMg01no151_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCTTCACTCACCAAACAAGTCCTTCTTTTGTACTGGAGGAAGCAGAAG
AGTCCATTTCTCATCTCCCTCCTGAACAAGTTTCAGGTTCTGCCTCTCCA
CTATGAAGCATTCATGGATATGAGGTTGGGCATGGGGACTATCTGGTGGT
ACAGCTTCACAGAAACCACCTCCTTCAAAGGATAAGATGAGGCTGACATT
GAAGACCCCAGACTGACACCACAGGGTTTGGAGCAATGCATACCTCTTGT
TCATTGATCCCTCTTTGAAAGCGATCAGGCAAGCTCTCTGCTCGTTTCTC
TTCTGGGTCATGAGGTGCAGCTCTGTTGTCAGCCTCTCCTTTTCCTTTTC
TAACTCATTCTCGACCCCCCCCACGCGCAGTGGATGATGTCTGTCTGTGA
GCCCCTGTAGGTAGAAGAACACAAGAATACTTTCCTGTGGGAATGCAAAG
AGTGTAGGCAGACCACCAAGAAAGAGAACATGCCTGGAAACTAGTGACAG
CAGAAAGAGTTTGGTCTGGGCTTGAGACGCCTCCACAGCGGGCCTCAGTT
CTCCCAGTACTCTAGAGACACCAGGAGATGTAAACAGCCCGGTGTTTCCT
CTGCCTTCCCTAACATGCTTGGTATTACCAGAGAGATGGCTTACGTAGGA
TGATCATCCATTGACTATAGCGCCTTTTGTCTTT

GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATATGGATATGTTAATTATTCATA
TCTTGGCACACGGAGAGAGAGCATATATTCCATCCTTTCTATTTCCATTG
CTAAGAGAATTTTATTTCCTTCAACCTCTTCCAAGTCACCTGCTCCCCAA
GTGCTGCTGGGTTTTCAAAATGCTATTCAAAACTCCCAGCTGACAAGTGT
TGGCTGACTTCGTTTCTGACATAGCTCATCCCTCTCAGGATGCTTTGGTT
TTGGTACAGAAGAAGCTCCATGATTCTGACAGTTAACCTAAGATATTTCT
CTAATTCTCTTGGGCGTCCTCATTTTTATTTATTTATTTATTTATTTATT
TATTTATTTATTTATCCCCCCCTTTATTTTGNNNANCTANTANNTGTTTC
TTAATGAGATCTTTGGTCATACATCCAAGTGCCATTATCAAGTCCCACCT
TATATTCAACCCCCTGTACTATTCTTCTTTTCTCCCTTTTCTTTTTCCCC
CCTCTATTCTTAACCTTTGTTTTTCTTCCCTTCTCATTTTATTCCTTCTC
TTCCTTTTTTACCGCTTTATCATATATATATTCCCCTTTAATTAATTATT
GTTTTCCACTCCATTTTACATCTTTGTTTTCTTTTACTCTCCTCTACTTT
CTCTTTTATCTCCTTCCTTCCCATCCCCCATTTCCCAGTATTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_n18.g1 MSMg01no151_n18.g1 CHROMAT_FILE:
MSMg01no151_n18.g1 PHD_FILE: MSMg01no151_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:47 2005
         (338 letters)



>mm_chr16_70019150_70019887
          Length = 738

 Score =  638 bits (330), Expect = 0.0
 Identities = 336/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatggatatgttaattattcatatcttggcacacggagagagagcatatattccatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tatatggatatgttaattattcatatcttggcacacggagagagagcatatattccatcc 440

                                                                       
Query: 61  tttctatttccattgctaagagaattttatttccttcaacctcttccaagtcacctgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttctatttccattgctaagagaattttatttccttcaacctcttccaagtcacctgctc 380

                                                                       
Query: 121 cccaagtgctgctgggttttcaaaatgctattcaaaactcccagctgacaagtgttggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cccaagtgctgctgggttttcaaaatgctattcaaaactcccagctgacaagtgttggct 320

                                                                       
Query: 181 gacttcgtttctgacatagctcatccctctcaggatgctttggttttggtacagaagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gacttcgtttctgacatagctcatccctctcaggatgctttggttttggtacagaagaag 260

                                                                       
Query: 241 ctccatgattctgacagttaacctaagatatttctctaattctcttgggcgtcctcattt 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 259 ctccatgattctgacagttaacctaagatatttttctaattctcttgggcgtcctcattt 200

                                                 
Query: 301 ttatttatttatttatttatttatttatttatttattt 338
           ||||||||||||||||||||||||||| ||||||||||
Sbjct: 199 ttatttatttatttatttatttatttacttatttattt 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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