BAC Information

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BAC

Clone NameMSMg01-152H01
Chromosome16 (Build37)
Map Location 58,615,622 - 58,616,119
singlet/doubletsinglet
Overlap geneGm813
Upstream geneCol8a1, LOC435480, LOC629342, LOC100043477, Dcbld2, St3gal6, LOC100043480
Downstream geneE330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152H01.T7 (MSMg01no152_h01.b1)MSMg01-152H01.TJ (MSMg01no152_h01.g1)
ACCAG354312AG354313
length720774
length of high quality
(start - end)		502 (49 - 550)---
definitionCHROMAT_FILE: MSMg01no152_h01.b1 PHD_FILE: MSMg01no152_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:32 2005CHROMAT_FILE: MSMg01no152_h01.g1 PHD_FILE: MSMg01no152_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAATCC
GCGGAATTCAAAGGATTACCAAGACACTCGGAACATCCAAGACCTCTTCT
AGATGACCACTGAGACAAGAAACTCTTTTCATGAGATTCCTACCTGAAAT
TTTAACTTCTGTTACCCTTCTCCCTTCCCCCAAATCCTCACCCCCGTCCT
AGGCTTGCTTGTACAGCGATGACACGACAATGACTAGTTTTGGAGCATAT
TCGCAGGACAAGGCTTCAGTGAAATGGTTTTATGCCAAAAGAATCCTGGC
ATACATCACCGAAAGAGGTAATAAGGTCTGCATTCCGGAAATTCAGGTGA
CTGTCATTCTACTTTAACAATTTCTGCTGGGGCTTTTTTCTAAATCTAAA
ATATAGGTGCTTGCTATTTAAATGTCCTAGTTAGGCTATTCATGTTCTTA
GTAACTGGACGTGAGTCAATAGCTTCAGGGATGAAACATGTCCATTAAAT
ACCTGTCTGGCTTTTCTCAATCAGCCAACCACACAAATCTCTGCATCTGC
AGCACCAGCATCATATGCGAATGGCGAAACATTCAAGTTCATGACTCTCG
CCTTGCCCAAGAAACCTGATTGTGACCACTGCCAACAACCTGTGCCTTAA
CAAACTCCTCAGATGCCCCTAACGCTCTGAAGAGCTTATAAGCATGGCTC
CCGCGAGTCTCCCCAGAGCN

AACCCATGAAGTGGGAGCCTGGNGGTGTCTGAATCTNAAAAAGANNGGAN
NNNNNNNNGTTACGAGAGAAGAGGNNGNNNNNAGANNNNNNGNNNNNGGN
NNNAGNGNTTTTTGCCGCCAAAAGGAANGGGAAAGNAGGGAAANAGGGGA
GAAANAGGAAGANGNNANGGGGGGGNGGGAGNAGNANAAGGGNNGGGGGC
AACCGNGGAGAGAGAGGCAAAAGGAAGGNANCCCCGTCTTTTTGGTAGAC
GGGCGGTGCTGTGCGGAGTGTGGACTGACGGCTCCTTTCGGCGAGAAGCG
CATTTTGGATGGTTTTACCACAGCCCGCGAACCGAAACCAAAAAACTTTT
TTTGCCCCCCCGCACAGTGTACCCTGTATTTCCCTCCCTTGTCCTTTACT
CACCCCCCCATTTCCTTTACAAAAAGAACCCCCTGCGGGTTGCATCCTGT
CTTTTCCGCTTTTGTTTTACGTTTTTTGTGTTTTCCCCCTTTTTCTCGCT
TTTCTCCTTACTTATTTCCCCCCATTTTTCCCGTTTTGCCCCTTTTTTCG
TTTTCCGTTTCTTTTCCGATTCCTTCCCTTTACTCTCCGTTACGTTATCC
CCCTCTTTTTTCCCTTTCTATTTGCCTTCGTTTTATTTTCTCGGTTGCCG
GCCTGTTTTTATTTGCGCTTGGCCCTCGTCGAAGATATCGTTTTTTTTTT
TTTTCTACCCCGCTTTTCTCTTCTTCGTATTGTGCATACTCCCCCCGTTA
TTTTCGATGATCTCACGTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_h01.b1 MSMg01no152_h01.b1 CHROMAT_FILE:
MSMg01no152_h01.b1 PHD_FILE: MSMg01no152_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:32 2005
         (502 letters)



>mm_chr16_58615418_58616319
          Length = 902

 Score =  917 bits (474), Expect = 0.0
 Identities = 492/498 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcaaaggattaccaagacactcggaacatccaagacctcttctagatgaccactg 64
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ggaattcaaaggacaagcaagacactcggaacatccaagacctcttctagatgaccactg 643

                                                                       
Query: 65  agacaagaaactcttttcatgagattcctacctgaaattttaacttctgttacccttctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 agacaagaaactcttttcatgagattcctacctgaaattttaacttctgttacccttctc 583

                                                                       
Query: 125 ccttcccccaaatcctcacccccgtcctaggcttgcttgtacagcgatgacacgacaatg 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ccttcccccaaatcctcacctccgtcctaggcttgcttgtacagcgatgacacgacaatg 523

                                                                       
Query: 185 actagttttggagcatattcgcaggacaaggcttcagtgaaatggttttatgccaaaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 actagttttggagcatattcgcaggacaaggcttcagtgaaatggttttatgccaaaaga 463

                                                                       
Query: 245 atcctggcatacatcaccgaaagaggtaataaggtctgcattccggaaattcaggtgact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atcctggcatacatcaccgaaagaggtaataaggtctgcattccggaaattcaggtgact 403

                                                                       
Query: 305 gtcattctactttaacaatttctgctggggcttttttctaaatctaaaatataggtgctt 364
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gtaattctactttaacaatttctgctggggcttttttctaaatctaaaatataggtgctt 343

                                                                       
Query: 365 gctatttaaatgtcctagttaggctattcatgttcttagtaactggacgtgagtcaatag 424
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 342 gctatttaaatgtcctagttaggttattcatgttcttagtaactggacgtgagtcaatag 283

                                                                       
Query: 425 cttcagggatgaaacatgtccattaaatacctgtctggcttttctcaatcagccaaccac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cttcagggatgaaacatgtccattaaatacctgtctggcttttctcaatcagccaaccac 223

                             
Query: 485 acaaatctctgcatctgc 502
           ||||||||||||||||||
Sbjct: 222 acaaatctctgcatctgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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