BAC Information

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BAC

Clone NameMSMg01-152P04
Chromosome16 (Build37)
Map Location 69,655,449 - 69,655,972
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneSpeer2, EG664930, Gbe1, D16Ertd519e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152P04.T7 (MSMg01no152_p04.b1)MSMg01-152P04.TJ (MSMg01no152_p04.g1)
ACCAG354682AG354683
length729727
length of high quality
(start - end)
550 (49 - 598)557 (79 - 635)
definitionCHROMAT_FILE: MSMg01no152_p04.b1 PHD_FILE: MSMg01no152_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:12 2005CHROMAT_FILE: MSMg01no152_p04.g1 PHD_FILE: MSMg01no152_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTCAAGCTTTCTCGAATGGAAATTTCAGGAATTTTATAAACAG
ACAAAACACTAAAAAGTAAAAATAATAAAAATAAAAATAAAAAACAAAAT
TTGCATAGTCAGGGAGAATAATATTTTATTTTTTTCTTCATTAATAAATG
TAATTATTCGCTTTACTTCCCAGTCACAGTCATTCTCCCTCCTTTTTAAC
ATGCCCCTCCCTCACAAGCCTCTCTCCCATTATCCCTCTCATTTCCTCAG
AGAAAGGGAAGTCCCCAATGGGTACCAGCTTGCCATGGTACATAAAGTCT
CAGGAAAACTAAACACATCCTCACTAATTGAGGCCAGGCAAGGCAGTCCA
GCTAGGGGAAGTGACAGAGGGAGGCAACAGAGACAGAAACATCCCAGCTG
TATTGTTATGAGACCTATATAAAGACTAATCTGCATATTGGCTATAAATG
TGTAGGGGGCCTAGGTCCAGCCTCTGCATGTTCTTTGGTTGGTGGTTCAA
TCTCAATAAGCCCTCATGGGCCGAGGGACTTGGCTCTGTATGTCTTCTTA
TGGAGCTCTAGATCCTTCTTCTGGCTCACTCAATCCTTTCTCACACTCTT
CCACAAGACTCCTTTGACTCCCTTGATGTTTGGCTGTGTGTCTCTCCATG
TTTTCATCAGTTGCTGGATGAACGTTCTC
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAATGTCTGACATTTCAGAAA
AGTGAATTAAAAAGAATGTAAATGTAGTCAGTACTTTAAGAATAGTGCAT
ATTGGGACACAGAACTCAGGGGATCCAAGCATCAAGTTGCTATTAAGATG
AGATAATTGAGGCACAAATCTTAAGTTTCCTCTGCTGGGGCCATGAGAAC
ATCTGGTGTGTGAAGGGGAGAGATAAGGGTTTTGGACACTTTCTAAACTT
TCAGCATAGAACCATTTCAGATATTATTATAATCAGTAGTCAGAAGGCAA
TTTTGAAAATAATTTTATTAATTCCAGATTCATATTCTTGACTAACCTTG
GTGACTCCTCCTTTGACATTCAGCCTGGATGACCTGAGCGCTGCTTTCTT
CTCATTTCCATGGTCACTATTTCTGGATATGGTAACTTGGCTATGGTAAC
TCATGCACTTAGAAATACAAACCTTATGCAGCCATAACTTTTTATTATTG
TTCTTTGTCCCTAGAAAAACTATGACCCAAGTACAGTAAGTTACTATAAA
AATATGTCTCTGAACTCATTTCCCCACCTAAAGGTAATTGCATTTATGAA
ATTTTTATCAGTTGTTGGTGATATCATTCTAGTACAGCCCTAATGACATC
CATCTTCTAAGCCCACTACTGCTAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_p04.g1 MSMg01no152_p04.g1 CHROMAT_FILE:
MSMg01no152_p04.g1 PHD_FILE: MSMg01no152_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:12 2005
         (557 letters)



>mm_chr16_69655016_69655972
          Length = 957

 Score =  924 bits (478), Expect = 0.0
 Identities = 507/524 (96%), Gaps = 13/524 (2%)
 Strand = Plus / Minus

                                                                       
Query: 47  tagtcagtactttaagaatagtgcatattgggacacagaactcaggggatccaagcatca 106
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tagtcagtactttaagaataatgcatattgggacacagaactcaggggatccaagcatca 898

                                                                       
Query: 107 agttgctattaagatgagataattgaggcacaaatcttaagtttcctctgctggggccat 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 agttgctattaagatgagataattgaggcacaaatcttaagtttcctctgctggggccat 838

                                                                       
Query: 167 gagaacatctggtgtgtgaaggggagagataagggttttggacactttctaaactttcag 226
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 837 gagaacatctggtgtgtgaaggggagagataagggttttggacactttctaagctttcag 778

                                                                       
Query: 227 catag------------aa-ccatttcagatattattataatcagtagtcagaaggcaat 273
           |||||            || ||||||||||| |||||| |||||||||||||||||||||
Sbjct: 777 catagatgcttaattttaacccatttcagatgttattaaaatcagtagtcagaaggcaat 718

                                                                       
Query: 274 tttgaaaataattttattaattccagattcatattcttgactaaccttggtgactcctcc 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tttgaaaataattttattaattccagattcatattcttgactaaccttggtgactcctcc 658

                                                                       
Query: 334 tttgacattcagcctggatgacctgagcgctgctttcttctcatttccatggtcactatt 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tttgacattcagcctggatgacctgagcgctgctttcttctcatttccatggtcactatt 598

                                                                       
Query: 394 tctggatatggtaacttggctatggtaactcatgcacttagaaatacaaaccttatgcag 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tctggatatggtaacttggctatggtaactcatgcacttagaaatacaaaccttatgcag 538

                                                                       
Query: 454 ccataactttttattattgttctttgtccctagaaaaactatgacccaagtacagtaagt 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ccataactttttattattgttctttgtccctagaaaaactatgacccaagtacagtaagt 478

                                                       
Query: 514 tactataaaaatatgtctctgaactcatttccccacctaaaggt 557
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tactataaaaatatgtctctgaactcatttccccacctaaaggt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)