BAC Information

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BAC

Clone NameMSMg01-153B15
Chromosome16 (Build37)
Map Location 8,018,098 - 8,018,646
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153B15.T7 (MSMg01no153_b15.b1)MSMg01-153B15.TJ (MSMg01no153_b15.g1)
ACCAG354793AG354794
length731730
length of high quality
(start - end)
570 (43 - 612)566 (71 - 636)
definitionCHROMAT_FILE: MSMg01no153_b15.b1 PHD_FILE: MSMg01no153_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:24 2005CHROMAT_FILE: MSMg01no153_b15.g1 PHD_FILE: MSMg01no153_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGAGAGAGACCGCGGAAT
TCAGAACAATTTCCGACACCTCTCCATTGCTGTTGGGAGTGCAAACTTGT
ACAACCATGTTGGAAATCAATTGGTGGTTTCTCAAAAACTGGCAATAGCT
CTATCTCAAGACTCAGCTATACCACTCCTGGCCATATACCCCAAAGGTGC
CCTATTATACCACAGGTACACTTGCTCAACTATGCTCATAGCAGCTTTAT
TTGTAATAGCCAGAAACTGGAGACAGCCCAGATAAGCTTCACATCTTCAA
CACATGTAGCACCTTTAGAAAAACAGAGCTGATGATAAGCAAGCTTCCTC
CTACTCATTTCTGCCAAGCCTTACATTTGGGCACACTCTATGCACAGTAG
CATTCACAGGGTGAGTGAAAGAAGGACCCACTTGCCCTTCCATGCATTTC
TCCACCTTCTGGATTACCCCACAGGGCAGAGTTTTAGGGAACACATTCCT
ATAACTACTAGGATTCATTGCTTTATTATCCATTATGATAAAATAGCTGC
TTTAAAATAAAACACTTATCTCTTACAGTAGTTAGATATTTATATTTTTT
AAATTTTTGCTTTTAATTTTATTAGCATATGTTATTATACAAAATAATGG
GATTCCTTTTTAGCATTTTCACACATGAGTTTAATGCACTCAAATGATAC
TCATATACCTGTCCCCATTGTCCATTCCTGC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTTTATTCAATTCAAGAAAGTTGTTAAC
TTCTTCATTTCTGGCTTAAACAGTTTTTTATTCAATAGAGAACTGTTTAA
TTTCCATTAATTTGTAAGCTGTTGTTTCTGTTGTTGTTGATATCCAACTT
TAATCTATGGGAGTCTGATGGCATGCATGGAGTTATTTCAATTTTCTTGT
ACTTGTTGAGATTTGCCTTCTATACAAGCATATGGCCAATTTTGGAGAAA
GTTCCATGAGGTGCTGAAGAGAAGGTTTCTTCTTTTGTATTTGGGTGAAA
TGTTCTGTAAATATCAGTCAGTTCCATTTGGTTTATAACATCCATTAGCT
CCAGCAATTCTCTTTTTAGTTTTTGTCTGGCTAACCTGTCTGTTCATGAA
AGTGGATTATTGAAGTCTCCCACTATCAGGGTGTGGGGCTCAATCTTTGA
TTCAAGTAGTGTTTGTTTTGCAAATGTGGGTGCCCTTGTGTTTGAGGCAC
AGATGTTAAGAATTACAATGTCACCTTGGTGGGTTTATCCTTGGTGAGTA
TGTCCTTCTCTGTCTCTTTGGATTAGTTTTAGTTTGAATTATATTTTTGT
TAGATATTGAAATAGTTATATCAGCTTGCTTCTTAGGACTGTGTGCTTTG
AATGTTTTTTTTTAATATTACCCTTTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_b15.b1 MSMg01no153_b15.b1 CHROMAT_FILE:
MSMg01no153_b15.b1 PHD_FILE: MSMg01no153_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:24 2005
         (570 letters)



>mm_chr16_8017684_8018653
          Length = 970

 Score = 1023 bits (529), Expect = 0.0
 Identities = 544/549 (99%), Gaps = 1/549 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  gacacctctccattgctgttgggagtgcaaacttgtacaaccatgttggaaatcaattgg 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 gacacctctccattgctgttgggagtgcaaacttgtacaaccatgttggaaatcaattgg 904

                                                                       
Query: 83  tggtttctc-aaaaactggcaatagctctatctcaagactcagctataccactcctggcc 141
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 903 tggtttctcaaaaaactggcaatagctctatctcaagactcagctatactactcctggcc 844

                                                                       
Query: 142 atataccccaaaggtgccctattataccacaggtacacttgctcaactatgctcatagca 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 atataccccaaaggtgccctattataccacaggtacacttgctcaactatgctcatagca 784

                                                                       
Query: 202 gctttatttgtaatagccagaaactggagacagcccagataagcttcacatcttcaacac 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gctttatttgtaatagccagaaactggagacagcccagataagcttcacatcttcaacac 724

                                                                       
Query: 262 atgtagcacctttagaaaaacagagctgatgataagcaagcttcctcctactcatttctg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 atgtagcacctttagaaaaacagagctgatgataagcaagcttcctcctactcatttctg 664

                                                                       
Query: 322 ccaagccttacatttgggcacactctatgcacagtagcattcacagggtgagtgaaagaa 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ccaagccttacatttgggcacactctatgcacagtagcattcacagggtgagtgaaagaa 604

                                                                       
Query: 382 ggacccacttgcccttccatgcatttctccaccttctggattaccccacagggcagagtt 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ggacccacttgcccttccatgcatttctccaccttctggattaccccacagggcagagtt 544

                                                                       
Query: 442 ttagggaacacattcctataactactaggattcattgctttattatccattatgataaaa 501
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttagggaacacaatcctataactactaggattcattgctttattatccattatgataaaa 484

                                                                       
Query: 502 tagctgctttaaaataaaacacttatctcttacagtagttagatatttatattttttaaa 561
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 483 tagctgctttaaaataaaacacttatctcttaaagtagttagatatttatatttttttaa 424

                    
Query: 562 tttttgctt 570
           |||||||||
Sbjct: 423 tttttgctt 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)