BAC Information

Click to search

BAC

Clone NameMSMg01-153G22
Chromosome16 (Build37)
Map Location 5,447,345 - 5,447,445
singlet/doubletsinglet
Overlap genenone
Upstream geneSrl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
Downstream geneLOC100042436, A2bp1, LOC100042445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153G22.T7 (MSMg01no153_g22.b1)MSMg01-153G22.TJ (MSMg01no153_g22.g1)
ACCAG355033AG355034
length719720
length of high quality
(start - end)
101 (467 - 567)---
definitionCHROMAT_FILE: MSMg01no153_g22.b1 PHD_FILE: MSMg01no153_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:48 2005CHROMAT_FILE: MSMg01no153_g22.g1 PHD_FILE: MSMg01no153_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCT
ATCTGCTCTTGCACGATGCGTGATCCTGATGTGACCACACTTTTCTAGAT
CCTGTTTAGACTACCTCACAGCGATGAACTATGACCTGGACTCGGAACTT
GATGATTCTCTTTTTCTATGTTGTCTTTTGCCAAGTCCTTTTATCATAGC
AACCGAAATGATATAGAGCATATACTTTTTTTTTAAATTTAAGAGCTTAC
TTTTATTTTCTTTCCTAAAATGATACCTCAGTTTCTGAGCTAGGCACCTG
TCGAGACAGCTCTTGTCTCTGTGAGCATGCTCAGTTACAGAACTGTGATA
GCTGAAATGCCCCATCTTACCTATCCATGATGGGACACACCCTACACCTC
AGATCATACCTCACAAAACATCACTCAAGTGAGGTGGACCAACCCAGACA
CTCTATCACAGGTGAGCAGCCATCAGGAAGGACCACACATGAAAGGGCTG
ACAAGACAACACCATGAGCCACTACACCATTCTGCAAGCCAAGAAGGTCT
GCTCTTTTCTCTCAGTCTCTGCGACATTACTCTGTATTTTGGGCATAGTT
GAGTTGTCACTGGATTCCTTCCTTAAGTCACATTGAAACCCAAACTCGGG
TTTCCCTTCCAGAGGTCACATCTGTTCACCATGGTTGTGATCGTCACTAA
AGATACCAGGATTCCTTAC
ATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGCGAATTCTCTGTTCAGATCCAAATACAAGCTTTCTTGA
CTCTCTGTTTTTTGAGTTCTTTATGTATTCTGGATGTTAACCCCCTGTCA
GATATATAGCTGGAAAAGATCCAACCCACTCTGTGGGCTCCCTCTTCACT
CAGTTTGTTGTTTCCTTAGCTATACAGAAACTTTCTAGAGTCATGAGGTC
CCCCTTGTCAATTGATGGCCAGGCTTAATTCCCAGGCTAACGGAGTCCTC
TTCACAAAGTCCTTTCTGTGTTGTTTCTTTGGAGTACTGGTTACCATGTT
GATGGAATTGCAAAACTGGTCACCCACTATGGAAGGCACATAGGTGCGAG
AATTGGGCAGGTCCAAGCAAGTTAGGGTCACATGGATTGCCTCACCTGGG
TGGCCAGAGTCCAGGCTGTGGTGGGGAGCACAGGCATTGTATTGATGGGT
GAGCTTAAAAGGCAAGATTCTTGCTAAGCAGCCCCAGGGAGACTATAGTG
GGGGGTCTGAGGAGGGTTGCTTGATTGTTCATTGACGAATGAGTTCCTGT
CCACTGCGGGCGGTGCCATTCTCTGCCTAAGTGATCTGTATTATATACTT
AAAGTTAGGCGAAGTATGAACCTGTTGTAGTCCCTTAGCCTTGCTTTTTG
ACTTACTTCCCGCATCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_g22.b1 MSMg01no153_g22.b1 CHROMAT_FILE:
MSMg01no153_g22.b1 PHD_FILE: MSMg01no153_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:48 2005
         (101 letters)



>mm_chr16_5447145_5447645
          Length = 501

 Score =  180 bits (93), Expect = 2e-50
 Identities = 99/101 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagccatcaggaaggaccacacatgaaagggctgacaagacaacaccatgagccactaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 301 cagccatcaggaaggaccacacatgaaagggctgacaagacaacaccatgagccaataca 242

                                                    
Query: 61  ccattctgcaagccaagaaggtctgctcttttctctcagtc 101
           |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 241 ccattctgtaagccaagaaggtctgctcttttctctcagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 501
Length adjustment: 8
Effective length of query: 93
Effective length of database: 493
Effective search space:    45849
Effective search space used:    45849
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)