Query= MSMg01no153_k18.b1 MSMg01no153_k18.b1 CHROMAT_FILE:
MSMg01no153_k18.b1 PHD_FILE: MSMg01no153_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:06 2005
(616 letters)
>mm_chr16_85528178_85529191
Length = 1014
Score = 1106 bits (572), Expect = 0.0
Identities = 602/614 (98%), Gaps = 6/614 (0%)
Strand = Plus / Minus
Query: 5 ggaattctcttgttttc-tcacctcattgaccctcccttgaaag-agttaaaagggaaat 62
||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 814 ggaattctcttgttttcttaacctcattgaccctcccttgaaagtagttaaaagggaaat 755
Query: 63 aaagaaagaatttgcttctggatcctaaagggctgggtgatatatttatacatggaagca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ----aaagaatttgcttctggatcctaaagggctgggtgatatatttatacatggaagca 699
Query: 123 atcagcagggatgtatgcatttttgtcagtagtaaacatatcagacttggaaaatatctg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 atcagcagggatgtatgcatttttgtcagtagtaaacatatcagacttggaaaatatctg 639
Query: 183 gactaagggagaaaagaaaacaagtacagagcagagtgtcttcgccaagagagtttggaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gactaagggagaaaagaaaacaagtacagagcagagtgtcttcgccaagagagtttggaa 579
Query: 243 agctggaggccttgcagcggggcttcgcctgctgaggggatttcccaggccttcctcagt 302
||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 578 agctggaggcctttcggcggggcttagcctgctgaggggatttcccgggccttcctcagt 519
Query: 303 gtcaacagaagagtaacatctgctactgccacctgctgacactggagcttccctgccccc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gtcaacagaagagtaacatctgctactgccacctgctgacactggagcttccctgccccc 459
Query: 363 gggagcaccctcagcctcagggaagctgtccagccgctccatcaaatgtgattatagatt 422
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 458 gggagcaccctcagcctcagggaagctgtccagctgctccatcaaatgtgattatagatt 399
Query: 423 gccgactggaaggcagctcaataagtgttgtatccctctgcccagagattgccaaaaaag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gccgactggaaggcagctcaataagtgttgtatccctctgcccagagattgccaaaaaag 339
Query: 483 tataccacagcccccaaagccatgcctcttagatttacatgtctgccatgttaccatagg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tataccacagcccccaaagccatgcctcttagatttacatgtctgccatgttaccatagg 279
Query: 543 ctgaccggggagttagaagagggtctcggaaacagggacaggtctgaataatgttaccta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctgaccggggagttagaagagggtctcggaaacagggacaggtctgaataatgttaccta 219
Query: 603 attcttatttacga 616
||||||||||||||
Sbjct: 218 attcttatttacga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1014
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1004
Effective search space: 608424
Effective search space used: 608424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_k18.g1 MSMg01no153_k18.g1 CHROMAT_FILE:
MSMg01no153_k18.g1 PHD_FILE: MSMg01no153_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:06 2005
(573 letters)
>mm_chr16_85467545_85468517
Length = 973
Score = 1062 bits (549), Expect = 0.0
Identities = 567/573 (98%)
Strand = Plus / Plus
Query: 1 aaaggaagcttataactgaaagcgactttatattatgccctcccttgattcctagttagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaggaagcttataactgaaagcgactttatattatgccctcccttgattcctagttagg 260
Query: 61 gtattgtgctagttctgttacacagtgaacagtacagacgattcaccatataagaaagaa 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gtattgtgctagttctgttacacagtgaacaatacagacgattcaccatataagaaagaa 320
Query: 121 aatgttattttggctcagggtttcaggggtctccacctacaggcgcttcttcctgttgcc 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgttattttggctcagggtttgaggggtctccacctacaggcgcttcttcctgttgcc 380
Query: 181 ttccagcctctagcccagcagtgtatagtggtggaaaagcggagcgggggaagttgttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccagcctctagcccagcagtgtatagtggtggaaaagcggagcgggggaagttgttca 440
Query: 241 ccttatgccaggatgaaagcaaagggaagagaaagacggtgggaggctgggggttaagat 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttatgccagcatgaaagcaaagggaagagaaagacggtgggaggctgggggttaagat 500
Query: 301 tacccaatcccagtgagccaacttccgtttattgtgcttcagccttttgtggtcccagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacccaatcccagtgagccaacttccgtttattgtgcttcagccttttgtggtcccagaa 560
Query: 361 ctttcccggagcatcaccccaagtaccatacctctgagaagacagcctatgagagaccca 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 ctttcccggagcatcaccccaagtaccatgcctctgagaagacagcctatgagagaccca 620
Query: 421 gcttcaccctctcagctgcatatggaattccaaagcagaaaagtttctcttggggtcttg 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 gcttcaccctctcagctgcatatggaattccgaagcagaaaagtttctcttggggtcttg 680
Query: 481 ctcactgtcctctagaatctgccccaggggaattccataaattctaattactttcctttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcactgtcctctagaatctgccccaggggaattccataaattctaattactttcctttt 740
Query: 541 tgtgatttctttattctgttctatctttctaaa 573
|||||||||||||||||||||||| ||||||||
Sbjct: 741 tgtgatttctttattctgttctatttttctaaa 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
