BAC Information

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BAC

Clone NameMSMg01-153P10
Chromosome16 (Build37)
Map Location 86,449,350 - 86,449,967
singlet/doubletsinglet
Overlap genenone
Upstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025, LOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153P10.T7 (MSMg01no153_p10.b1)MSMg01-153P10.TJ (MSMg01no153_p10.g1)
ACCAG355391AG355392
length731726
length of high quality
(start - end)
627 (69 - 695)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no153_p10.b1 PHD_FILE: MSMg01no153_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:28 2005CHROMAT_FILE: MSMg01no153_p10.g1 PHD_FILE: MSMg01no153_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGGAA
TTCTCATGTTCTCATGAGTGTTCGCTAGAGTCTACGGAATGCCATGGGAC
TAGAGAGATTTCTAAAATGTTGCTGACTATTGAGGAGTAGGTAACAATTT
GATTGCCTTCATGGCCTTTCTCTTATCTTTGTTCGAGCTGTTACTTTGTA
TGGAAATACTACAATGTCAGAAGTCCCTTAACTCCTACTACAATTTTGCA
ACATATGAAAACGGATGTGAAGTAGAAGATTAGGAGTGCAGGGGTAAAGT
GTTGTTTCCACAAGCCAGAACTGAAATATCAGGATGCATACCAAACTTCA
TTTAGAGAAGTACCATCCATATCATAAGATGTTGCTTTGAGCTATATGGG
TAGAATTGCTGAGTATCTTTCTCCTGTCTCAGCAGGATTTTTTTTAAAAA
AAAAAACATTACTACAAGGGTTTTTAAAATGTGAATTATAAGAGTAAGAG
AGAGGAGCAGGACTTTGAGTTCCTTCAAGATTCTTGGCCTGACATAGAAA
AAAAAGTATATTTTAAAGTAGATGTTGTAAGAAGGCATCATTGAAGTCTA
TTAGAGATGGGGGTTAAATACCGAGAGGGATAGGCAGACTGGCTGAAAGA
GGGAGACAAAAAGGCAAGGAACTGCAAAATTATGCTTTTCAAAGAGAAAG
AACTGCATGAACACAGAGTGTATCTGTTAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCGT
CATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGT
GTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGG
TCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCA
ATCTCTGGAGTTAGCTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCT
GTTGATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCT
CTGAGTTTCTTTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCA
GGGAAGGTGCACCGCTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTG
AAGGCCCACAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAT
GGTGGCCAGTTGTCTGGAGTCGAACATGTCACAGCCTCAGAAGCTCTGTG
GCTCTTGCTCGGGAAGGTGTCTGGTTGTTTGCCTCCGACTTTGGTCCCCC
CTCATATTTTTTGCCCCTCCTCTCGTCCGTTCTTGTAACGTTTGGCCTCT
TCGTTTTCCCTTCTTTCCCCCTGTGTTCTTTGTCCTCCCGCCTCACTCCC
GTCCCCTCATACTTTTTTCGTCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_p10.b1 MSMg01no153_p10.b1 CHROMAT_FILE:
MSMg01no153_p10.b1 PHD_FILE: MSMg01no153_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:28 2005
         (627 letters)



>mm_chr16_86449058_86450084
          Length = 1027

 Score = 1033 bits (534), Expect = 0.0
 Identities = 600/632 (94%), Gaps = 19/632 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttcgctagagtctacggaatgccatgggactagagagatttctaaaatgttgctgact 60
           |||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 910 tgtttgctagagtctatggaatgccattggactagagagatttctaaaatgttgctgact 851

                                                                       
Query: 61  attgaggagtaggtaacaatttgattgccttcatggcctttctcttatctttgttcgagc 120
           |||||||||||||||||||||||         ||||| ||||||||||||||||||||||
Sbjct: 850 attgaggagtaggtaacaatttg---------atggcgtttctcttatctttgttcgagc 800

                                                                       
Query: 121 tgttactttgtatggaaatactacaatgtcagaagtcccttaactcctactacaattttg 180
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 799 tgttactttgtatggaaatactacaatgtcagaagtcccttaacttgtactacaattttg 740

                                                                       
Query: 181 caacatatgaaaacggatgtgaagtagaagattaggagtgcaggggtaaagtgttgtttc 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 caacatatgaaaactgatgtgaagtagaagattaggagtgcaggggtaaagtgttgtttc 680

                                                                       
Query: 241 cacaagccagaactgaaatatcaggatgcataccaaacttcatttagagaagtaccatcc 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 679 cacacgccagaactgaaatatcaggatgcataccaaacttcatttagagaagtgccatcc 620

                                                                       
Query: 301 atatcataagatgttgctttgagctatatgggtagaattgctgagtatctttctcctgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atatcataagatgttgctttgagctatatgggtagaattgctgagtatctttctcctgtc 560

                                                                       
Query: 361 tcagcaggatttttttt----aaaaaaaaaaacattactacaagggtttttaaaatgtga 416
           |||||||||     |||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcagcagga-----tttaaaaaaaaaaaaaaacattactacaagggtttttaaaatgtga 505

                                                                       
Query: 417 attataagagtaagagagaggagcaggactttgagttccttcaagattcttggcctgaca 476
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 504 attataagagtaagagagaggagcaggactttgagttacttcacgattcttggcctgaca 445

                                                                       
Query: 477 ta-gaaaaaaaagtatattttaaagtagatgttgtaagaaggcatcattgaagtctatta 535
            | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaggaaaaaaaattatattttaaagtagatgttgtaagaaggcatcattgaagtctatta 385

                                                                       
Query: 536 gagatgggggttaaataccgagagggataggcagactggctgaaagagggagacaaaaag 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagatgggggttaaataccgagagggataggcagactggctgaaagagggagacaaaaag 325

                                           
Query: 596 gcaaggaactgcaaaattatgcttttcaaaga 627
           ||||||||||||||||||||||||||||||||
Sbjct: 324 gcaaggaactgcaaaattatgcttttcaaaga 293


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)