BAC Information

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BAC

Clone NameMSMg01-154N22
Chromosome16 (Build37)
Map Location 17,023,660 - 17,024,123
singlet/doubletsinglet
Overlap geneMapk1
Upstream gene2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519
Downstream geneYpel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154N22.T7 (MSMg01no154_n22.b1)MSMg01-154N22.TJ (MSMg01no154_n22.g1)
ACCAG356041
length723720
length of high quality
(start - end)
---464 (65 - 528)
definitionCHROMAT_FILE: MSMg01no154_n22.b1 PHD_FILE: MSMg01no154_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:37 2005CHROMAT_FILE: MSMg01no154_n22.g1 PHD_FILE: MSMg01no154_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXX
ATGTGGTAGGCTGGCGGCGCCTGGTTCCAAATATAGGTGAACTATAGAAG
TTTCCAGAAATTCCAGGTAAGAAAAAGAAACAACAGCTATAACCTTCCTT
TTCAGCCTGCTATATCTGGCCAGAGCCAGAGTGCTATCTGAGAACTGAAC
TTTTGGGCTTAGGAGTCACCATCTTCAGTCACAGTGACTGTACATACTAC
TAAAATACTTCCTGTGGCAACTTACATACCTGTTCTTTATGTTGTTAGAG
TTTCTAGTAAGGTGCATTTCTGTGCAAATGCTCCAGAGCTATTCTACAAA
GGTCACGTTGTCTGATAATGAAGAGTATCTCCAGCAAAATTACTGGGTGC
AGGGAGAACAGAACCACTATGGACTTTTGAAATTACAGGGTAGTTATTTT
TGAAACTGAAATCCTCTTCTCCGAGTTGTTGTGAAGGGTATTTCAGATCA
TCCAGACTCTGCTAATAAAACCCGTGTCTTGCTATTGGTGGTGGTGCATA
TCCTTATCCTTCCATTCAGGCAGGAGCAAGCATACGTCTGTGTTTCTATA
TAGCAAGTTCTAGAACAGCCCAGGCTACATAAAGAGACCTTCTCTCAAAA
AAACAGAAAGGGGTGCCCGGCAAGCAAGAACAATGTCAGCTCTCACGAGG
CAAAGGTAGAATTGCCACAAGCCATAAAGACCAGCCTAGGCTAGTAATGC
TTTGTCACAAATACAAACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_n22.g1 MSMg01no154_n22.g1 CHROMAT_FILE:
MSMg01no154_n22.g1 PHD_FILE: MSMg01no154_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:37 2005
         (464 letters)



>mm_chr16_17023460_17024323
          Length = 864

 Score =  882 bits (456), Expect = 0.0
 Identities = 462/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtaagaaaaagaaacaacagctataaccttccttttcagcctgctatatctggccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtaagaaaaagaaacaacagctataaccttccttttcagcctgctatatctggccaga 260

                                                                       
Query: 61  gccagagtgctatctgagaactgaacttttgggcttaggagtcaccatcttcagtcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccagagtgctatctgagaactgaacttttgggcttaggagtcaccatcttcagtcacag 320

                                                                       
Query: 121 tgactgtacatactactaaaatacttcctgtggcaacttacatacctgttctttatgttg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tgactgtacatactactaaaatacttcctgtgacaacttacatacctgttctttatgttg 380

                                                                       
Query: 181 ttagagtttctagtaaggtgcatttctgtgcaaatgctccagagctattctacaaaggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagagtttctagtaaggtgcatttctgtgcaaatgctccagagctattctacaaaggtc 440

                                                                       
Query: 241 acgttgtctgataatgaagagtatctccagcaaaattactgggtgcagggagaacagaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgttgtctgataatgaagagtatctccagcaaaattactgggtgcagggagaacagaac 500

                                                                       
Query: 301 cactatggacttttgaaattacagggtagttatttttgaaactgaaatcctcttctccga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactatggacttttgaaattacagggtagttatttttgaaactgaaatcctcttctccga 560

                                                                       
Query: 361 gttgttgtgaagggtatttcagatcatccagactctgctaataaaacccgtgtcttgcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttgttgtgaagggtatttcagatcatccagactctgctaataaaacccgtgtcttgcta 620

                                                       
Query: 421 ttggtggtggtgcatatccttatccttccattcaggcaggagca 464
           |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 ttggtggtggtgcatatccttatccttccattcaggcaagagca 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)