BAC Information

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BAC

Clone NameMSMg01-156P19
Chromosome16 (Build37)
Map Location 31,743,667 - 31,889,956
singlet/doubletdoublet
Overlap geneDlg1, Mfi2
Upstream geneLOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536
Downstream geneLOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156P19.T7 (MSMg01no156_p19.b1)MSMg01-156P19.TJ (MSMg01no156_p19.g1)
ACCAG357585AG357586
length720715
length of high quality
(start - end)		321 (45 - 365)298 (73 - 370)
definitionCHROMAT_FILE: MSMg01no156_p19.b1 PHD_FILE: MSMg01no156_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:14 2005CHROMAT_FILE: MSMg01no156_p19.g1 PHD_FILE: MSMg01no156_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,889,641 - 31,889,956)(31,743,667 - 31,743,964)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGAGAGGGAAGTGGGCGCCATATTAGACATCATCTGCAGAGCCTG
GGATGCAGGAACTGAGGCTCACTGAGCCTCCTGCTGGGTTCTGAGGGTGC
CTGGCAAGACTCTGCTCCTTTCTCCACAGGCCTGGGTGCCTCCTTCCCTG
GCTCCTGTGAAGGCTGTGTGGATGCATCTGCAGCTGAGAGGCAGCTGATC
CTGCCCCTTCTCATCTTTCTGCAGCAAGGTGGCATTCAGAAAGAGCTACC
CAGAGATAGGCCAGTCTGCCAGGCACTGGGGAATAGATCTCCTCTCTTCC
TGGCCTCCCTTTGTCTTAGTGCCCCGCCAACGAAGCCAGGAGGACAGACC
CGAGTGGAATAGAGCAACGCACAGAGCTTTACCTGTGGGTTAGGGGGTAC
CAAGGCACCAGAACGTGGGTTAGTGGGTACCAAGGCACCGGAACGTGGGT
TAGTGGGTACCAAGGCAAGTGCTCAGGAAAAGGCCAAAACCAAATGCAGG
AAACAGAAATACCAAGCATTTTTCTATCCCTTCATGCATAGGATGCAATT
TTCATATATTCCTATTAAATTTTGTGCAATAGATCTTCAAACACAATGAA
ATCTATTTCTAAGTGTGAATTGCCAACAGAAATGTCTAGCANATAAATGG
TGATCTCCCACTCTCAACAT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTGTGTATTTTGAACTTTAATTTGCA
GTTTTGTGCAACATTATATTCCTACAATTTATTATTTGATTTCACAATCT
AGATTTTTCTGTTTTATAAGCCTTCATAATTTTTCTCTCTCTTAATTGGC
ATTGAATTATTTTCAGGTTATTGCTAGATCAAAAAAACAGGAAAGACCAT
CTAGACACTTGCCCTCTTGATAAATAGTGCCAAACTACTTCACAATATTT
GTATGATTTTCACTTTCAAAAGCAAAATTTGAGGCTTTAATTGGTCATAA
ATACATGGTGTTGTTAATTTCCTCTTGATTTTGAAATGACATTTCATTAT
GACTTGAATATACATGTCCCTTTTTATTAGTGAGCTAGGCTATGCATACT
CATCAGGTAGGCTTCATGTTTTGTGAGTTACCCAGGTAGGATTTTTGCTT
GTTTTTATATGGAGTATGATTTGGACCAGTTTGTAAGCAGATGGGTTTTG
TTTGTTTATTCTAAGTATTTGTTTAAGGGCCATTTATTTTCTTTTTTTCT
GGAACTCAAACTGACTTGGGATCTTGAGTCCTCCTTTCCTGGCCTTCTGA
GTGCTGTTGGGATTACAGCCCTTCTTCCTTAGTTTGTTTACGTGGTGTTT
ACCCTGACTGCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_p19.b1 MSMg01no156_p19.b1 CHROMAT_FILE:
MSMg01no156_p19.b1 PHD_FILE: MSMg01no156_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:14 2005
         (321 letters)



>mm_chr16_31889438_31890158
          Length = 721

 Score =  580 bits (300), Expect = e-170
 Identities = 312/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggagagggaagtgggcgccatattagacatcatctgcagagcctgggatgca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaattcaggagagggaagtgggcgccatattagacatcatctgcagagcctgggatgca 460

                                                                       
Query: 64  ggaactgaggctcactgagcctcctgctgggttctgagggtgcctggcaagactctgctc 123
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggaaatgaggctcactgagcctcctgctgggttctgagggtgcctggcaagactctgctc 400

                                                                       
Query: 124 ctttctccacaggcctgggtgcctccttccctggctcctgtgaaggctgtgtggatgcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctttctccacaggcctgggtgcctccttccctggctcctgtgaaggctgtgtggatgcat 340

                                                                       
Query: 184 ctgcagctgagaggcagctgatcctgccccttctcatctttctgcagcaaggtggcattc 243
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctgcagccgagaggcagctgatcctgccccttctcatctttctgcagcaaggtggcattc 280

                                                                       
Query: 244 agaaagagctacccagagataggccagtctgccaggcactggggaatagatctcctctct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agaaagagctacccagagataggccagtctgccaggcactggggaatagatctcctctct 220

                           
Query: 304 tcctggcctccctttg 319
           |||  |||||||||||
Sbjct: 219 tcccagcctccctttg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no156_p19.g1 MSMg01no156_p19.g1 CHROMAT_FILE:
MSMg01no156_p19.g1 PHD_FILE: MSMg01no156_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:14 2005
         (298 letters)



>mm_chr16_31743467_31744164
          Length = 698

 Score =  576 bits (298), Expect = e-169
 Identities = 298/298 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgtgtattttgaactttaatttgcagttttgtgcaacattatattcctacaatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgtgtattttgaactttaatttgcagttttgtgcaacattatattcctacaatttat 260

                                                                       
Query: 61  tatttgatttcacaatctagatttttctgttttataagccttcataatttttctctctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttgatttcacaatctagatttttctgttttataagccttcataatttttctctctct 320

                                                                       
Query: 121 taattggcattgaattattttcaggttattgctagatcaaaaaaacaggaaagaccatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taattggcattgaattattttcaggttattgctagatcaaaaaaacaggaaagaccatct 380

                                                                       
Query: 181 agacacttgccctcttgataaatagtgccaaactacttcacaatatttgtatgattttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacacttgccctcttgataaatagtgccaaactacttcacaatatttgtatgattttca 440

                                                                     
Query: 241 ctttcaaaagcaaaatttgaggctttaattggtcataaatacatggtgttgttaattt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttcaaaagcaaaatttgaggctttaattggtcataaatacatggtgttgttaattt 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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