XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTATTGATAATGTAGCAGAAGCCAGACACCTCAAACAAGGCCATTTGAAG
TAGAGCTGTGGGGCAAAAGGGTATACTGTGGGACATACCATGCCATTCTG
CAGCTTCCATGATAAAATGTTGTTGTTGTTCTTGTTGCTATTGTTGTTGT
TATTGCTGCTGCTGTTGCTGTTGTTGTTGTTGCTGCTGCTGCTGCTGTTG
TTGTTGCTGCTGTTGTTGCTGCTGCTGCTGCTGCTGCTGTTGCTGTTATT
GTTGTTGTTTTCTTTTGGGGGTGGTTGCAAAGGCAGAGTGTAGATATAAA
GGGATGATTATATGACCCGCCACTGCCCTGNNATNANNTNNNNNNNNNNN
NNTTTNNTTTCTCCCCAAAAAAAAAAAAAAAATAACTTTCGTTCGTTGAG
TCAATACACAATCTATACCTTTCCACTATCATTTCTTATTAATATCTTTA
TAAATTACCTATAATTCTTTCTTTTAAATAAAACCTATTTTTTTAAAATA
TTCTATTTTAATCTTCATCTCACTTTATTTCATTTACATTATTTCCCTTT
TTCCTCTACCACCTTCTATTTAAACCCTCATATAAATTCTATATTAATAC
ACATACCTTTTCCTCCTCTAATATATCCACTATCTAACTATCGACACACC
AACGCCATTATAACAATTACTCTTATACCACTATATATTTTTAACCATTT
CTTACTCACTTTATTTATTTAAGTTCCACTCATATAACACCAAAATCACT
CN

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTGATGTGGTATTTCAAGTCCACGGAGAC
CAAGGACCAGCACTCTCCATTGCTCCTGATCTGACTGCTCACGTAGTACC
TGGCCTGAAATAAGTACTCAGTAGCTACGTGTTGGGTAAACATGTGAACT
GGACTAAAGTGTCAGTTGCCAAGCCCCTTGAGAAATGAATGAGACCTGAG
AAGAAGGCTGATTTTTTGCAATCTTGAGGTCTAGCTTTCACAGTGTGTAA
CTATGCTGTTATATGCATGAGCCTTTGTGCCCTTATTTTCCTGACAAACC
TAACTTATTATTATTTTTCTTTTACTTTTTATTTTTAAGCATTTGGAGAC
AGGATTTCACAATATAGCCCAGATTGACCCAGAACTCATAATTTTCCTGC
CTCAGTCTCCCAAGTGTTAAACTGAAAGTGTCTATTGCCACCCCAGTTCT
ATAGACTTTGCTTACAGCAATCTGTAGGGCTGTTGTGATAAATAAAATGG
TTCTTGTGATGGTTAATAGTGATTGTAGCCTTATCATGATCTAGAATCAC
CTTGGAAACAAGTTCTTGGGCAAGCCTGTAAGAGATTATCTAGGTTGGCT
AACTGAGGTTGGATGATCCATCCTAAATATGGTGGCACTGTTATAAAATA
TAATGCATCAGTGCGGGTAAGG

Query= MSMg01no157_l02.g1 MSMg01no157_l02.g1 CHROMAT_FILE:
MSMg01no157_l02.g1 PHD_FILE: MSMg01no157_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:05 2005
         (652 letters)



>mm_chr16_9029109_9030160
          Length = 1052

 Score = 1168 bits (604), Expect = 0.0
 Identities = 640/652 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgatgtggtatttcaagtccacggagaccaaggaccagcactctccattgctcctgat 60
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 201 cctgatgtggtatttcaagtccacggagaccaaagaccagcagtctccattgctcctgat 260

                                                                       
Query: 61  ctgactgctcacgtagtacctggcctgaaataagtactcagtagctacgtgttgggtaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgactgctcacgtagtacctggcctgaaataagtactcagtagctacgtgttgggtaaa 320

                                                                       
Query: 121 catgtgaactggactaaagtgtcagttgccaagccccttgagaaatgaatgagacctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgtgaactggactaaagtgtcagttgccaagccccttgagaaatgaatgagacctgag 380

                                                                       
Query: 181 aagaaggctgattttttgcaatcttgaggtctagctttcacagtgtgtaactatgctgtt 240
           ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||
Sbjct: 381 aagaaggctgattttttgcaaccttgaggtctagctttcatggtgtgtaactatgctgtt 440

                                                                       
Query: 241 atatgcatgagcctttgtgcccttattttcctgacaaacctaacttattattatttttct 300
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 atatgcatgagcctttgtgcctttattttcctgacaaacttaacttattattatttttct 500

                                                                       
Query: 301 tttactttttatttttaagcatttggagacaggatttcacaatatagcccagattgaccc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tttactttttatttttaagcatttggagacaggatttcacaatatagcccaggttgaccc 560

                                                                       
Query: 361 agaactcataattttcctgcctcagtctcccaagtgttaaactgaaagtgtctattgcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaactcataattttcctgcctcagtctcccaagtgttaaactgaaagtgtctattgcca 620

                                                                       
Query: 421 ccccagttctatagactttgcttacagcaatctgtagggctgttgtgataaataaaatgg 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccccagttctatagacttcgcttacagcaatctgtagggctgttgtgataaataaaatgg 680

                                                                       
Query: 481 ttcttgtgatggttaatagtgattgtagccttatcatgatctagaatcaccttggaaaca 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 ttcttgtgatggttaatagtgattgtagccttgtcatgatctagaatcaccttggaaaca 740

                                                                       
Query: 541 agttcttgggcaagcctgtaagagattatctaggttggctaactgaggttggatgatcca 600
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agttcctgggcaagcctgtaagagattatctaggttggctaactgaggttggatgatcca 800

                                                               
Query: 601 tcctaaatatggtggcactgttataaaatataatgcatcagtgcgggtaagg 652
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 801 tcctaaatatggtggcactgttataaaatataatgcatcagtgggggtaagg 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)