Query= MSMg01no157_n16.b1 MSMg01no157_n16.b1 CHROMAT_FILE:
MSMg01no157_n16.b1 PHD_FILE: MSMg01no157_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:17 2005
(320 letters)
>mm_chr16_60669634_60670352
Length = 719
Score = 559 bits (289), Expect = e-164
Identities = 307/313 (98%), Gaps = 1/313 (0%)
Strand = Plus / Minus
Query: 6 aattcaaatgacatgccttcaaaaatctaaagtgaaactgagaggaagaaaatctgccat 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aattcaaatgacatgccttcaaaaatctaaagtgaaactgagaggaagaaaatctgccat 458
Query: 66 tatacctatcaaatatatttaatttatattgtaaggctttttattttttctttccacatc 125
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 457 tatacctaccaaatatatttaatttatattgtaaggc-ttttattttttctttccacatc 399
Query: 126 tttcttcccaccacaattcattggaaacaaatgcagtatttgttcctccccaaatttagc 185
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tttcttcccgccacaattcattggaaacaaatgcagtatttgttcctccccaaatttagc 339
Query: 186 ttcataaattaggttagtgttaggaagacataagagaccaaggacaatataacccttcct 245
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 338 ttcataaattaggttagtgttaggaagatataagagaccaaggacaatacaacccttcct 279
Query: 246 ataatggaggtgtaaactacgaatacattattcttactattgccatctgtcagtattatc 305
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ataatggaggtgtaaactatgaatacattattcttactattgccatctgtcagtattatc 219
Query: 306 cttttgtttttta 318
|||||||||||||
Sbjct: 218 cttttgtttttta 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space: 220810
Effective search space used: 220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no157_n16.g1 MSMg01no157_n16.g1 CHROMAT_FILE:
MSMg01no157_n16.g1 PHD_FILE: MSMg01no157_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:17 2005
(669 letters)
>mm_chr16_60542008_60543076
Length = 1069
Score = 1212 bits (627), Expect = 0.0
Identities = 657/669 (98%), Gaps = 4/669 (0%)
Strand = Plus / Plus
Query: 1 caaagataaaacagatagaaattcatcccaggagtcaacaaaatgcgagataaatatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagataaaacagatagaaattcatcccaggagtcaacaaaatgcgagataaatatttt 260
Query: 61 ctgcctgtaaaatgctctctcaaaaatttcaagtacattaaaggtctactaaatttgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcctgtaaaatgctctctcaaaaatttcaagtacattaaaggtctactaaatttgact 320
Query: 121 agagagaaataataataaattaaatcctatgagaagaagacatagataaaaggcagactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagagaaataataataaattaaatcctatgagaagaagacatagataaaaggcagactt 380
Query: 181 acatcaccaggaacgtattcaaaggacaatcttaattatgttgtcatcattttgtaaaat 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatcaccaggaatgtattcaaaggacaatcttaattatgttgtcatcattttgtaaaat 440
Query: 241 acttggaaacaatttgaaaggatttattttcaaattaattaaagatcattcaaaataact 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 acttggaaacaatttgaaaggatttattttcaaattaattaaagatcaatcaaaataact 500
Query: 301 tatcaaccagggcactggtggcacacacttttaatcgctgcacttgggaggcaaaggcag 360
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattaagcagggcactggtggcacacacttttaatcgctgcacttgggaggcaaaggcag 560
Query: 361 gcagatttctgagtttgaggcctgcctggtctacagagttccaggacattcagggctaca 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagatttctgagtttgaggccagcctggtctacagagttccaggacattcagggctaca 620
Query: 421 tagagaaaccctgtctccattcctccccccccccaaaaaaaaataaaaacttattaatgt 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 tagagaaaccctgtctccattcctcccccccc----aaaaaaataaaaacttattaatgt 676
Query: 481 caattattttttttaattagagttccgtaggggctgagcctgcttcctttctcccttttt 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 677 caattattttttttaattagagttccgtaggggctgagcctgcttccattctcccctttt 736
Query: 541 ccctctctcctcccctctctcccctttcgcctcccctctctccctctctttttcataaaa 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 737 ccctctctcctcccctctctcccctttcacctcccctctctccctctctttttcataaaa 796
Query: 601 ttaatccaagaaggaatggaagaatatagttagtggaaacgagtgtagctgaaaactgca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ttaatccaagaaggaatggaagaatatagttagtggaaacgagtgtagctgaaaactgca 856
Query: 661 tatttggat 669
|||||||||
Sbjct: 857 tatttggat 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
