BAC Information

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BAC

Clone NameMSMg01-157O03
Chromosome16 (Build37)
Map Location 56,753,353 - 56,907,673
singlet/doubletdoublet
Overlap geneGpr128, Tmem45a, LOC668026
Upstream geneNfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp, Tfg
Downstream geneLOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23, Tmem30c, 2610528E23Rik, 4631422O05Rik, Col8a1, LOC435480, LOC629342
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157O03.T7 (MSMg01no157_o03.b1)MSMg01-157O03.TJ (MSMg01no157_o03.g1)
ACCAG358245AG358246
length718718
length of high quality
(start - end)
320 (37 - 356)293 (67 - 359)
definitionCHROMAT_FILE: MSMg01no157_o03.b1 PHD_FILE: MSMg01no157_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:19 2005CHROMAT_FILE: MSMg01no157_o03.g1 PHD_FILE: MSMg01no157_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,907,358 - 56,907,673)(56,753,353 - 56,753,645)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAT
GGGACTATTTCTACCATGGAACACATGAACTTTCTCTACTATAGCAGTGG
ACTTGCTGCTGTGATTGCAAGCTGCAAACTGGGCTAAAAGATTCCTACTA
GGAAGTTGACAAGATAGGCACTGGTAAGGATTTGGTAGAGGGGAGTGCCA
GCCAGTGTTGCCCAATCCATCATCAGTGTTCACCCAGAAGAGGTGAAGTT
GTAGAAACTAAACACAAACTCTGAACAGTGCTTTGGGCACAGCCCAGCCA
CCAGTAGTCCCTAACCCTGCAAAAATGCAGCAAACAGATGCTTGGAATTT
GCTTCTGTCCTCCACATACTCAGAAAAACAATTTTTAAAAGCCTTTACAT
GATGGGGGTTGGGAGTGGCCATCGTATGAGAAAAACTGATTATTTAAAAC
CAACATGAAATATGGTCCAGACCAGGACCAAGGGGCAAAGTGGCAGATCA
GCCAAGGAATGGAAATCAATACTCAGGCCCTTAATCTCATTTCTTATATT
CCCACCAAGCTCTCCTACTTGCCTACTGCTATTATCTGTCAGAAATCCAT
TATCTTCTATGTACTCCCAGCTCTCAACCCTGCTGCCCACAGATATTTTT
TGTCTATATAGTTCAGGCCATTGTATCCCTGCCTCTCCTTTTTCTTTTTA
CTTTTTCTTCCTTTCTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAAGCAAATTAAATCCAAGAAAGGTTTATGGGA
ACTAGTTGATAATTGGTCAATAAGTAAAGGTAAAACTCTCTGGGGCTTGT
AACTGTCTGTCTGTCTGTCTGTCTCTATGTATGCATGTGTGTGAAAACCT
TGACAGACCAGTCTAGGCTTTTAGGCTATAAGAGATATTGTGAACATATG
TGACCCTCCAGTTGGCAAACTGCTCCTATCCTTCCCGTAGATTTCTTCCC
GATGTTCCCCTTTCTTATCTATCGTCTATGTGGAGATGATATATGTCTGC
TTATTCTGCCTCATTTACACCCATCTCACTTTCTATGCAATAAGATGGGA
GGCAGAATCTGTGGGTAGACACAACTGAAGCTTCTTCTTCCTCCAGCTAG
TACAGCACTGAGCAAGAAATAGCAAAAGGTTACCATCTGTCAAGGTGACT
GTGCCTACAGAAGCCCCCATAAGGGCTGCCCTCCATTTGTGGCAACAGAT
CAGATGCCTTAAGTCACCAGGCAACACATTTGAAGGAAGCTTTGATGGAG
GTCTTGGCACAGGCATGCCTCACCGTCTCTGCTCTGACTGTTAGGCACCA
GCTAGCTCAGAGCAGGAAGGCCATTGTGAAGCACTTCTTTTGGACGTCAG
AGAATAGAATCAGCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_o03.b1 MSMg01no157_o03.b1 CHROMAT_FILE:
MSMg01no157_o03.b1 PHD_FILE: MSMg01no157_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:19 2005
         (320 letters)



>mm_chr16_56907155_56907874
          Length = 720

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccatgggactatttctaccatggaacacatgaactttctctactatagcagtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaattcccatgggactatttctaccatggaacacatgaactttctctactatagcagtg 460

                                                                       
Query: 64  gacttgctgctgtgattgcaagctgcaaactgggctaaaagattcctactaggaagttga 123
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 459 gacttgctgctgtgattgcaagctgcaaattgggctaaaagattcctactaggaagttga 400

                                                                       
Query: 124 caagataggcactggtaaggatttggtagaggggagtgccagccagtgttgcccaatcca 183
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 399 caagataggcactggtaaggatttggtagaggggagtgccagccagtgttacccaatcca 340

                                                                       
Query: 184 tcatcagtgttcacccagaagaggtgaagttgtagaaactaaacacaaactctgaacagt 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tcatcagtgttcactcagaagaggtgaagttgtagaaactaaacacaaactctgaacagt 280

                                                                       
Query: 244 gctttgggcacagcccagccaccagtagtccctaaccctgcaaaaatgcagcaaacagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gctttgggcacagcccagccaccagtagtccctaaccctgcaaaaatgcagcaaacagat 220

                           
Query: 304 gcttggaatttgcttc 319
           ||||||||||||||||
Sbjct: 219 gcttggaatttgcttc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_o03.g1 MSMg01no157_o03.g1 CHROMAT_FILE:
MSMg01no157_o03.g1 PHD_FILE: MSMg01no157_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:19 2005
         (293 letters)



>mm_chr16_56753153_56753845
          Length = 693

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagcaaattaaatccaagaaaggtttatgggaactagttgataattggtcaataagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagcaaattaaatccaagaaaggtttatgggaactagttgataattggtcaataagta 260

                                                                       
Query: 61  aaggtaaaactctctggggcttgtaactgtctgtctgtctgtctgtctctatgtatgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggtaaaactctctggggcttgtaactgtctgtctgtctgtctgtctctatgtatgcat 320

                                                                       
Query: 121 gtgtgtgaaaaccttgacagaccagtctaggcttttaggctataagagatattgtgaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgtgaaaaccttgacagaccagtctaggcttttaggctataagagatattgtgaaca 380

                                                                       
Query: 181 tatgtgaccctccagttggcaaactgctcctatccttcccgtagatttcttcccgatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtgaccctccagttggcaaactgctcctatccttcccgtagatttcttcccgatgtt 440

                                                                
Query: 241 cccctttcttatctatcgtctatgtggagatgatatatgtctgcttattctgc 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccctttcttatctatcgtctatgtggagatgatatatgtctgcttattctgc 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)