BAC Information

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BAC

Clone NameMSMg01-158A16
Chromosome16 (Build37)
Map Location 23,612,868 - 23,613,148
singlet/doubletsinglet
Overlap geneRtp4
Upstream geneDgkg, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018
Downstream geneEG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158A16.T7 (MSMg01no158_a16.b1)MSMg01-158A16.TJ (MSMg01no158_a16.g1)
ACCAG358363AG358364
length698700
length of high quality
(start - end)
310 (36 - 345)281 (64 - 344)
definitionCHROMAT_FILE: MSMg01no158_a16.b1 PHD_FILE: MSMg01no158_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:30 2005CHROMAT_FILE: MSMg01no158_a16.g1 PHD_FILE: MSMg01no158_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCTG
GAACAACTACAGCTGTGGAGAGGGAAACAGCCCAGGCATGTGTGGAAGAC
ACTGTTTGGCAGGAGTCCTTCCAGACCTCTGTTCTCACAACCCTTCCATC
ACCTTTTCTGCAGGGTTCCTTGAACTCTATGATGAGGGGTGTGATGTAGG
TGACCATTTAGGGCTGAGGACAGTTCCTCATTTTCTACAGTCTGGCCGGA
TGTGAGTCTATGTATTTATCACAGCCCATTGTAAAATGAAGCTTCTCTGA
TACAGGTTGAGAGCTTCATTAATCTATGGGTGTAGAAGTGTTTAGAATGC
GGTTCGTCAGNACTNNCCCTGACAAAATGATACCAGTGGTTCTTTCCTGA
GTTCCCCCCACAAAAAAAAAATAGGTTCTTCGCCAAATCTACAGGGCCAG
GCATGAGTCCTGTGGTGTGAGCCTTATATTCAATTATAAGGCAGTTGGTC
AATGAAGGAGGAGTGGGTCAGCAAGCGAAGCAGGTGTTTCCACATTCACC
AACCCTGGAATATACCTGACACCCAGAGGGGAACAAAGACAGAGTATGTG
ACTGCGGGCAGCCCATCAACTGAGCGGTACTAACTGCTGGGAACGAAGGC
GAGTCTAGCCCCAGGTACCTGCCAAGGTACCATTCTTTATTTTATTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTTGATGATCTCTGTGGAGAACTTGGGAGTCTCAAA
TTGACATCCAAAACACTTCTGGCACTTCTGACCAAAGATCCTCATGCGTG
CCTGGCCCTGCGATTTCAAAGTGTCCTGGTACATGTGGCACAAGATCATC
ACCTGAGCAGAGGTCCAACTTCTGCAGCATCTGGAACACTGGAACCTATA
GACAGAAGAAAGAAATCCTCTGTGTCCTTGGCTGGCCGCGGACCTGACAG
GAAATGGTCAGCTAAGGGATTTAAGAATCCCCTTCAGTGTAGAGAACTTC
ACTGGTTTCCCCCCGCACCGCTCACAGATAAACAGGAGCAAGAGGCAATC
TCTTCCACACAATTAAATGATACTGAGTCTGCCTCTTTGATAGGAAAAGA
CCTACTACATAACATCACCTCTAATGAGCAACATGACTAACATGGGAAAA
ACCTATGGCTGAGGCTTCATAAGGGATAAAACACAGTTTGAGGTAGGGCA
AGGTTGGGCAGGTACCCTTGAAAAGGGAAAAATGAACTGAGGGTTCTAGG
AGCCCTAGAAAAGTCACTAGGTTTCTGGAAAACGAGGGTTTGACTTCCCA
GGCTAGCCATCTTTAAACCTCCTGACAAGGTGAAGTCACCTTGAAGGTTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_a16.g1 MSMg01no158_a16.g1 CHROMAT_FILE:
MSMg01no158_a16.g1 PHD_FILE: MSMg01no158_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:30 2005
         (281 letters)



>mm_chr16_23612668_23613348
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgatgatctctgtggagaacttgggagtctcaaattgacatccaaaacacttctggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttttgatgatctctgtggagaacttgggagtctcaaattgacatccaaaacacttctggc 422

                                                                       
Query: 61  acttctgaccaaagatcctcatgcgtgcctggccctgcgatttcaaagtgtcctggtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 421 acttctgaccaaagatcctcatgcgtgcctggccctgcgatttcaaagtgtccgggtaca 362

                                                                       
Query: 121 tgtggcacaagatcatcacctgagcagaggtccaacttctgcagcatctggaacactgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgtggcacaagatcatcacctgagcagaggtccaacttctgcagcatctggaacactgga 302

                                                                       
Query: 181 acctatagacagaagaaagaaatcctctgtgtccttggctggccgcggacctgacaggaa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 301 acctatagacagaagaaagaaatcctctgtgtccttggctggccgcagacctgacaggaa 242

                                                    
Query: 241 atggtcagctaagggatttaagaatccccttcagtgtagag 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atggtcagctaagggatttaagaatccccttcagtgtagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)