BAC Information

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BAC

Clone NameMSMg01-158F20
Chromosome16 (Build37)
Map Location 84,646,548 - 84,646,855
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621729, LOC640489, LOC665664, LOC547311, LOC100039893
Downstream geneLOC100039634, Mrpl39, Jam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994, LOC622000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158F20.T7 (MSMg01no158_f20.b1)MSMg01-158F20.TJ (MSMg01no158_f20.g1)
ACCAG358595AG358596
length753751
length of high quality
(start - end)
312 (41 - 352)285 (71 - 355)
definitionCHROMAT_FILE: MSMg01no158_f20.b1 PHD_FILE: MSMg01no158_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:53 2005CHROMAT_FILE: MSMg01no158_f20.g1 PHD_FILE: MSMg01no158_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCCCAACGTTTAGTGGTCGAGCTGAGTTGCTAAATTCTACGTTGCAACA
GTCTATGTACTTTGCATGAAAAAAAAAATACATCGTTTTATTCACCATAC
AAAAAGTCCCTTTGAACACACTCTATTTGGGGGTAATTTTCTGACTCAAA
GAGTTTGTCTTATTTCCCCAGGGATGCTTTAATCATTTCTCTCTTTTACC
CACTGAAGACCTCAAAGAATCCAGTTATGTGTCACGAATGCACATATGCG
CCAGACACATTCAGAGTATACCTTTCCTGCTAAAGAGGTAGGAGCAGAAG
AATAGTTCTTTTGCACCCCCCCCCGAGAGCTTCCCCGCGTATTTGAGGCC
AGGTTCTTCCCCCCACGTTTCACAACAACTCCTTAATAATCATTAATGGA
TCAATGTCTTATGCCAAAGGATTAAGCCTCAGTAATTTTTTCCCTTCATT
TCACAGTTCAGCCAAGGGGCAATTTTTAGAGAAATAGCTGAAATCTAGAA
AAACTTAGTGGAAAATATATATTTAAAATAAACCAAGTTCAGATCTCCAT
AGCTAGTCCTAGCCAGGAAATACCTAGATTAGACACAGTGGTATAAAGCA
AGATGTATACGCGATTTCTATGTATTTCTGAGTTACAACTCTAGCTCACA
ATGTCCTATAGATCACCCAGGAAAGGACAACAAATTTCTCCTACTGACTT
TGG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCAGAGCAGAAGGAGAAAGAAGTAAGAAA
GTCAGATATAATAGAATAATTATGCACACCAAGGTCAACTGAAAAGCAGT
CATGCACAAATGAAATCTATACAGCCATTGTCCAGGACTAAGCTTAAGAG
AAATGGGAACAACTGTTTTTTTACAAAGAGCTTTCGAGGGCTACTGAGAT
GTCTCCATCCGGGACTACTGCAGGCAGTACCTGTCATTGTATACTGTCCC
CAGCAGTTAGTAGTAGCTTTAATAGTCACCATGGCAGTCTTATCAAAATG
ATAAGTTTTTATACTGCCGCACCCCGCACTTCCACATATGTTTTCAGAAA
AATTAGACAGCACCCCACCCCAGCAAAACTCTCAATCTCAAATATATGGT
GGGAACAGGCACACAGTCAACACACACACACACACACTTAGAGGGTGGAT
ATGATTTAATAAATACATTATTTTATTGCAGGCCTGAATAATTAGAGAGC
TGGGATGTGGCCTAACCTTTTCGTATGTTTTTCTACACTACATTTTATGA
GTCTATGATTTTTGAGTGGTTTTTGGGTGATCATGACTCTGTCACGAGGG
AACCTATTGGAATTTCTAGTCTTATGTGTCCCAGTACAAGAATTGAGCCA
GGAGTTCTTAGACTACAGTGGACAGAGAGATGTTTTTATTTTGCAAAATT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_f20.b1 MSMg01no158_f20.b1 CHROMAT_FILE:
MSMg01no158_f20.b1 PHD_FILE: MSMg01no158_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:53 2005
         (312 letters)



>mm_chr16_84646345_84647055
          Length = 711

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcccaacgtttagtggtcgagctgagttgctaaattctacgttgcaacagtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcccaacgtttagtggtcgagctgagttgctaaattctacgttgcaacagtc 263

                                                                       
Query: 64  tatgtactttgcatgaaaaaaaaaatacatcgttttattcaccatacaaaaagtcccttt 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 tatgtactttgcatgaaaaaaaaa-tacatcgttttattcaccatacaaaaagtcccttt 322

                                                                       
Query: 124 gaacacactctatttgggggtaattttctgactcaaagagtttgtcttatttccccaggg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaacacactctatttgggggtaattttctgactcaaagagtttgtcttatttccccaggg 382

                                                                       
Query: 184 atgctttaatcatttctctcttttacccactgaagacctcaaagaatccagttatgtgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgctttaatcatttctctcttttacccactgaagacctcaaagaatccagttatgtgtc 442

                                                                       
Query: 244 acgaatgcacatatgcgccagacacattcagagtatacctttcctgctaaagaggtagga 303
           || ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 443 acaaatgcacatatgcgccagatacattcagagcatacctttcctgctaaagaggtagga 502

                    
Query: 304 gcagaagaa 312
           |||||||||
Sbjct: 503 gcagaagaa 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space:   212706
Effective search space used:   212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)