BAC Information

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BAC

Clone NameMSMg01-158O07
Chromosome16 (Build37)
Map Location 35,981,392 - 35,981,760
singlet/doubletsinglet
Overlap genenone
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9
Downstream geneKpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158O07.T7 (MSMg01no158_o07.b1)MSMg01-158O07.TJ (MSMg01no158_o07.g1)
ACCAG358980AG358981
length714723
length of high quality
(start - end)
369 (33 - 401)287 (63 - 349)
definitionCHROMAT_FILE: MSMg01no158_o07.b1 PHD_FILE: MSMg01no158_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:30 2005CHROMAT_FILE: MSMg01no158_o07.g1 PHD_FILE: MSMg01no158_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGCAGT
ACCCTGGAGGCAGTAATTGAAGCAGATCATGGAGGAATTTGGTCCCTGGC
TTACTCTCACCTTGTTATCCTATACAGCCCAGAGGTGGCACCGCCCACAG
TGAGTCTCACATTAATCGTGAATCAGGAAAACACCCCACGGACGAGCCTT
CAGGCCAATCTGGTGGGAGCAGTTAGCCCATGTGGTCCTTTTTCTCCTCC
TGTCTTACATTTATAGATGTATTGATTTGAAGAGTAAAAAAGTAAAATAA
TGACTGCCCTGAGAACTGGCGCTGCGGGATGAACCGAACGCTGGGTTAAG
GCGCCCGATGCCGACGCTCATCAGACCCCAGAAAAGGTGTTCCTCTCGTA
CCCACCACGATTATCATGGCAACAACACATCATCAGTAGGGTAAAAGTAA
CCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA
ACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGGT
TAGACAAGCGCAGAAGGGAAAGAGAAGATAGACAGAGCTGGTTTGAAAAT
TGGTTTAATAAGTCTCCTTGGCTTACCACCCTTGGTTCTACCCTTGCCGG
TCCCCTAATCATCCTTTTGCTTTTGCTCACTTTTGGACCTTGCATTCTTA
ATAAGTTAGTGGCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTACTGAATTCCAAGTTGTCAGCTTCATGGTCTTTCTA
GGACATTGGAACACTGGCAAAGACTTAACTGTATCAGGATTCAATTTTAA
AAGGCAGGGAACAGGAAGGAGGGGGTGACAACTGGCTCCTTAGTACAAGG
CCATTTGGCTTGTTAGGGTGGGAGGCTGTGAAGAGCTTGCCTTCTCATGG
TATGATCTCCAACCTCTCGCCCCTTTGAATTAAATTTAATAAGGCCACAC
TTAACTGAGGTGATCAAATGATCTTTTCATCCTTGGATGAGCGGGCATTA
TCTCATGGCTCGCCCGAGCATTGACCCGATTCCTCCCCTGGGTACTGTCA
TGACCCACAACCATGGCTCTTGGTATCTTTTAGGGAGGGGAGGCAGAGCC
TCAGAAAGATCTTTTTTTTTTTTTTTTTTTTTTCCACCCNNNGGGCTGTA
ACTGCAAATAGATACTATCCTCCATCCATACCGGAGGTGCGTCTCAGGGA
AACTTAGAACTGGCCACCTTGGCCCTCCCGCTGAATATTTTATTTCCCGA
TTTACCCTGTCGCCCATACTGGTCTCTTTTTACCCCCAACTCCATCCCCT
CTCGTGTTGAATTCGGCTCAATTCTATATTTAAGAATCGTCAATTACTAC
TTTTATCTTTCCGTCCTGTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_o07.b1 MSMg01no158_o07.b1 CHROMAT_FILE:
MSMg01no158_o07.b1 PHD_FILE: MSMg01no158_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:30 2005
         (369 letters)



>mm_chr16_35981189_35981960
          Length = 772

 Score =  644 bits (333), Expect = 0.0
 Identities = 359/369 (97%), Gaps = 3/369 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaggcagtaccctggaggcagtaattgaagcagatcatggaggaatttggtcc 63
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaggcaggaacctggaggcagtaattgaagcagatcatggaggaatttggtcc 263

                                                                       
Query: 64  ctggcttactctcaccttgttatcctatacagcccagaggtggcaccgcccacagtgagt 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctggcttactctcagcttgttatcctatacagcccagaggtggcaccgcccacagtgagt 323

                                                                       
Query: 124 ctcacattaatcgtgaatcaggaaaacaccccacggacgagccttcaggccaatctggtg 183
           |||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 ctcacatttatcgtgagtcaggaaaacaccccaccgacgagccttcaggccaatctggtg 383

                                                                       
Query: 184 ggagcagttagcccatgtggtcctttttctcctcctgtcttacatttatagatgtattga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggagcagttagcccatgtggtcctttttctcctcctgtcttacatttatagatgtattga 443

                                                                       
Query: 244 tttgaagagtaaaaaagtaaaataatgactgccctgagaactggcgctgcgggatgaacc 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcgaagagtaaaaaagtaaaataatgactgccctgagaactggcgctgcgggatgaacc 503

                                                                       
Query: 304 gaacgctgggttaaggcgcccgatgccgacgctcatcagaccccagaaaaggtg---ttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 504 gaacgctgggttaaggcgcccgatgccgacgctcatcagaccccagaaaaggtgctgttc 563

                    
Query: 361 ctctcgtac 369
           |||||||||
Sbjct: 564 ctctcgtac 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 772
Length adjustment: 9
Effective length of query: 360
Effective length of database: 763
Effective search space:   274680
Effective search space used:   274680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)