BAC Information

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BAC

Clone NameMSMg01-160J20
Chromosome16 (Build37)
Map Location 11,404,455 - 11,404,760
singlet/doubletsinglet
Overlap genenone
Upstream geneNubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17
Downstream gene4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160J20.T7 (MSMg01no160_j20.b1)MSMg01-160J20.TJ (MSMg01no160_j20.g1)
ACCAG360239AG360240
length746794
length of high quality
(start - end)
308 (48 - 355)---
definitionCHROMAT_FILE: MSMg01no160_j20.b1 PHD_FILE: MSMg01no160_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:37 2005CHROMAT_FILE: MSMg01no160_j20.g1 PHD_FILE: MSMg01no160_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATGGGGCCTGTTCCGTGAGACTGCATGCTGAGTGTCCTACAG
GCTCCAGTGTGTGAGCTAAAATCCAGGAACCTTAGTGCTGTGCGTCTGGG
AAGTAGGAGAGCCCTGTGAGTCCAAGTCCATGGACAGGAGAACACAGCAC
CTCAGTTCACACTGTCAGGCATGAAGGAAGCTCTTCCTGCCTCCCTCAGA
CTCCTCTGCTCTTGTCAGGTCCTGGCTAACAGGAAAGCCCTGTCACTAGT
AAATCCACCCAAACACTGATCTCAGCCTGAATACTCTCCCAGATTCCAGA
AACAATTTTTTATTTTTGCACCCCCCCCCACGTTCAGCAAAGGTGACCTT
TATATAAAACTTTTGCCCCACCCAATAACATGAAAAATAGTAAGTTCTGA
GAAGCAGTGTATGTGGACCCAACTCCCAGCATGGCAACCTCTTTGCCAAA
TGTCAACTTTGAAATTGTCTTTCCTCTGAAGCTTACAGCATGGAGAGCAT
CGGAGATGATCTTAGGCAGATGGCCAGTGCACGTGTGTGAATGACAGCCA
AACCTTGTCACATTTTAGACTTATTTATTTTATGTGTGTGGATGTTTTGC
CCGATTGTCTTTTTTGTTCTCTCCCTTTATTCGTAATCTTTTTTATTAAT
TATTATTTTAACTCTAAAATTTTTTGTTCCTATTTTCTTTTTTTTT
AATGCTGTGNNTANCCTGGCGNCCGCCTGTTTCCCNAATTTANGTGACCT
ATTNAAGTATTCCCGGAATTCANGGNCNGCCTGGTCTACNGAATGAGTTC
TAGGACAGACTGTTCTATCCCGATAAACCCTGTCTCGAANAACCNNNATC
CGNNTGTGATGGTGCATGTTATCCCCTTNAAAAGCTGGTTCTATCAGCGC
TGCTCATGTCAGCGCAGCTCNAACTGTTTAACCTTCCCTTTTTTCTTTTT
TCTTTTTTTNTTCTTCCNNNNNTTNTNTNTTTTTNTTTTTTTTTTTTTNC
CCNTTTTTTTTTTNNNTCTTTTTTTTTTTTTCCTCCCCCCTTTTTTTTTT
TTTTTTTCCCCCCCTTTTTTTTTTATTTTTTTTTTATTCCTTTTTTTTTT
TTTTTTTTTACAAAAAGAAAAAAAAAAAGTAAAAAAAAAAAAGAAAAAAT
AGAAAGAGAAATTTCTTNNNTNTTTTTNTTTTTTTTTTTTTTTCTTTTTT
TTTTTTTTCTTCTGTCCTATAAAAAAAATGTTTCACTNCACCCCCCNNNC
CTCTACAACNNNNNTTTACTTCTTCCCAACCNTTTGTTTNTNNTNNTTTN
NNNNGTTNNNTTTTTTTCTCTTTAAAAAAAAAAAAGAGAGTTNNTNNNNA
ACGTTNNTTTTTACTCTTTNNNTNTCNCTCTTTTTTTTCTCTTTTTCTCT
CCCTTCAGAAATGCTATTTCNTTTTCNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTCTCTCTTTTTTTTTTATTATAAAAAATAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_j20.b1 MSMg01no160_j20.b1 CHROMAT_FILE:
MSMg01no160_j20.b1 PHD_FILE: MSMg01no160_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:37 2005
         (308 letters)



>mm_chr16_11404252_11404960
          Length = 709

 Score =  569 bits (294), Expect = e-166
 Identities = 303/306 (99%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatggg-gcctgttccgtgagactgcatgctgagtgtcctacaggctccagtg 62
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggaattccatgggcccctgttccgtgagactgcatgctgagtgtcctacaggctccagtg 450

                                                                       
Query: 63  tgtgagctaaaatccaggaaccttagtgctgtgcgtctgggaagtaggagagccctgtga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgtgagctaaaatccaggaaccttagtgctgtgcgtctgggaagtaggagagccctgtga 390

                                                                       
Query: 123 gtccaagtccatggacaggagaacacagcacctcagttcacactgtcaggcatgaaggaa 182
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtccaagtccatgggcaggagaacacagcacctcagttcacactgtcaggcatgaaggaa 330

                                                                       
Query: 183 gctcttcctgcctccctcagactcctctgctcttgtcaggtcctggctaacaggaaagcc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gctcttcctgcctccctcagactcctctgctcttgtcaggtcctggctaacaggaaagcc 270

                                                                       
Query: 243 ctgtcactagtaaatccacccaaacactgatctcagcctgaatactctcccagattccag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctgtcactagtaaatccacccaaacactgatctcagcctgaatactctcccagattccag 210

                 
Query: 303 aaacaa 308
           ||||||
Sbjct: 209 aaacaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 709
Length adjustment: 9
Effective length of query: 299
Effective length of database: 700
Effective search space:   209300
Effective search space used:   209300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)