BAC Information

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BAC

Clone NameMSMg01-161L01
Chromosome16 (Build37)
Map Location 9,568,913 - 9,569,291
singlet/doubletsinglet
Overlap genenone
Upstream geneAbat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161L01.T7 (MSMg01no161_l01.b1)MSMg01-161L01.TJ (MSMg01no161_l01.g1)
ACCAG361029AG361030
length1,1931,221
length of high quality
(start - end)
422 (44 - 465)380 (72 - 451)
definitionCHROMAT_FILE: MSMg01no161_l01.b1 PHD_FILE: MSMg01no161_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:35 2005CHROMAT_FILE: MSMg01no161_l01.g1 PHD_FILE: MSMg01no161_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNATATCACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACCTGATAATCAAGGAAGGGTTACTGCCAATACATCCCAAATTATT
CCACAGAATAGAAACAGAAGAAACATTGCCCAATGAGTTTTAAGGGATTG
CAATCTCCTTGATCAACAAAGAGAATTACAGACCACTTTCCTTTATGAAC
ACATATGAAAAAATAATAAAATACTTGAAAACTGAATTCAAGAACACATC
AAAAAGATCATTCACCATGATCAAGTAGGTTTCATTCCAGAGATTCAGGG
ATAGTTTAGTTTATAAAAATCAATGTAATCAATAAATAAACTGAAAGAAA
CAAAAAGACACATGACAAAATTCAATACCTCTTCATGATAAAAGTCCTAG
AGATATTACTAAAGACATAATTAAAGACAATAAAGGCAATTTATAGTAAG
CTATATTTTTTTTTCACCCCCCCCGGAAAGAAATTTAACCATAATTCAAA
AAAAATCAGGAACAAGAAAAGTCTTTCCACTCTATTTATTCATTATAGTA
TTTGAAGCTCTATATGAACAACAAGAAAACTGAAGGAAATCAAGGGGTAA
AATTTGGAAAGGAAGAAGTCAAAGTATCGTTATTTTTAGTTGATAGGATA
GTATGAATAAATGATTGCAAAAATTCCACCAGGAAATTCCTACAGATTAT
AAACACTTTTTACAAAACGAAAAGATACAAGATTAACTAAAAAATCAGTA
GCCCTCTGTGGTGGTTTGAATAGGTATTTTTCTTGTAGACTCATGTGTTT
GAATGCTTAGCCCAGAGAGTGGAACTATTAGGAGGTGGGATCTTGTTGGA
GTAGGTGTGTTCTGTGNTAAAGAATGTGTAAAGTGTGAATAAGTTTTTGT
ATTATATTTAAATTAATCAGATTAGTTGTGTTTTCTACTTTCTGTTACTG
TTGAATAAAAGTTTCATTCTTACTTTCTTTTTCCTTAACTGACTTCCTGA
CTCTTTCTCCTTATTCTCTACAACAACTGTATTATATCTTTCTCTGTCTA
TATAACCCCCTTAAATATTTTCATTTTCACTTCTTTTCTCTCTCTCTTTT
TTTCTTTATCCTTACTTTCTCCTCTCTTTCTTTTTCTTCACTTCTCTCTA
TATGTTTTCTTTTTTTCATTCATTTTTCTCACATCCATTATTT
NNTTATTCAATGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTGACGGTTTTTCATATTACCCATGTAT
AATACATTGAATTGTTTCTCTTCCCAGTCAGGCTAATTCTAATGAACAAA
CAGTATTGACTTTTAAAACCTGTTTTCCTTTTTAAAGTATCTTAAATGTA
TTAAGTCTGTAGACACAGCTCTGAGGCCGCGGCCATTAGGGAAGAACCCC
ATGTCAGAACAGAAGAATCAGACAGGGTTTTGTGGCTCATCTGAGCAATC
ATCTTTGGAAATTTGATGGATTTGGAAAGCTCAAACTGACAACTCTAACA
TTCACATTACCCTGATATTTTCATTGGGTAGGATGTAAATGAACAAAAAT
TTTTAAAGAAGATATTAAGTCAGGGTTATGTAGGAAACATGGTTGTTGTA
TTTTTTTTCCCCCCCCCGCGGCTCGGATGCTTCCCAAGCCAAAAAAACGC
CAAAGATGTTTTTATGGTTGTCTTCAGACTATGAATGTTAACCTTGTTCA
TTCCCCTGATAAGACATATTAATCGGTAGAATTCATCATAGTTTATATGG
TCCTGGGACATTTGTGTATGTATGCTTATTATATTTTGAACTGAATATCA
GACAGAATTAGGTGAGTTAATTGGTGGCTTGAATAAGAAATAGGTCACAA
AAGTCATAAATAATGTTCTTCTCAAACAGTAAAAGAAGGTAAACTATTCA
TTTTCTAGCCATGCTTTAAGACTCAAATTTATGTACAAGCTACCCATTGC
CCACAGGAGAGTTATTGAATTAGATAGCTTATTCATAAAGGGTTTCCATA
TGAGTCCATCTTTAACCCAGTGTGAATGGGAATTGAACTCATGCAGAGGG
CTTCCATCCACAACTACATTAATCTGCATCTAAAACTCACATTAAGACTG
CCTTGACCCCCTGTAACAATGGATCCCAAGAATAACTGTGTGGTCCATCA
AATGGGCCTCCTTTTGGGAAAAAAATATTCACCCCCCTGTTTACACCAAT
TTATAACTGTCATTGTCGAAACCCCCTCATGAAGAAAATGGCTATAAACT
GTTTTTAAATTATTTTCCCAACCTAAACTTACAAAATTAACCCTTTTTTT
TATAACACCTCTTTCTTGATGGAAGAGAAAGATTTATCCTTTGGTCGTCT
CTCTCTTGTATAAAATCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_l01.g1 MSMg01no161_l01.g1 CHROMAT_FILE:
MSMg01no161_l01.g1 PHD_FILE: MSMg01no161_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:35 2005
         (380 letters)



>mm_chr16_9568713_9569492
          Length = 780

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgacggtttttcatattacccatgtataatacattgaattgtttctcttcccagtcag 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 579 attgacggtttttcatattagccatgtataatacattgaattgtttctcttcccagtcag 520

                                                                       
Query: 61  gctaattctaatgaacaaacagtattgacttttaaaacctgttttcctttttaaagtatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gctaattctaatgaacaaacagtattgacttttaaaacctgttttcctttttaaagtatc 460

                                                                       
Query: 121 ttaaatgtattaagtctgtagacacagctctgaggccgcggccattagggaagaacccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttaaatgtattaagtctgtagacacagctctgaggccgcggccattagggaagaacccca 400

                                                                       
Query: 181 tgtcagaacagaagaatcagacagggttttgtggctcatctgagcaatcatctttggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgtcagaacagaagaatcagacagggttttgtggctcatctgagcaatcatctttggaaa 340

                                                                       
Query: 241 tttgatggatttggaaagctcaaactgacaactctaacattcacattaccctgatatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tttgatggatttggaaagctcaaactgacaactctaacattcacattaccctgatatttt 280

                                                                       
Query: 301 cattgggtaggatgtaaatgaacaaaaatttttaaagaagatattaagtcagggttatgt 360
           || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 279 cactgggtaggatgtaaatgaataaaaatttttaaagaagatattaagtcagggttatgt 220

                              
Query: 361 aggaaacatggttgttgta 379
           |||||||||||||||||||
Sbjct: 219 aggaaacatggttgttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)