This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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BAC name
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search by nearby gene name.
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Search Result
BAC
Clone Name
MSMg01-162D06
Chromosome
16 (Build37)
Map Location
52,139,349 - 52,139,452
singlet/doublet
singlet
Overlap gene
Cblb
Upstream gene
LOC627543
Downstream gene
Alcam
,
LOC100043430
,
LOC667895
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC627543
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:627543
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 9204 ESTs, 13 Proteins
pseudo
: _no_value
name
Cblb
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:208650
MGI:2146430
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Alcam
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:11658
MGI:1313266
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100043430
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043430
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
name
LOC667895
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667895
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
Cblb
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118344447
GeneID:208650
MGI:2146430
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Casitas B-lineage lymphoma b
transcript_id
: NM_001033238.1
name
Alcam
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31791058
GeneID:11658
MGI:1313266
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: activated leukocyte cell adhesion molecule
transcript_id
: NM_009655.1
name
LOC100043430
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149267441
GeneID:100043430
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
product
: similar to C11G6.3
transcript_id
: XM_001480151.1
name
Cblb
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:118344448
GeneID:208650
MGI:2146430
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA]; GO:0006955 - immune response [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA] [Evidence IMP]; GO:0050860 - negative regulation of T cell receptor signaling pathway [Evidence IMP]; GO:0042110 - T cell activation [Evidence IMP]; GO:0006512 - ubiquitin cycle [Evidence IEA]
codon_start
: 1
product
: Casitas B-lineage lymphoma b
protein_id
: NP_001028410.1
name
Alcam
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31791059
GeneID:11658
MGI:1313266
definition
GO_component
: GO:0030424 - axon [Evidence IDA]; GO:0043025 - cell soma [Evidence IDA]; GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0007411 - axon guidance [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0008045 - motor axon guidance [Evidence IMP]
codon_start
: 1
product
: activated leukocyte cell adhesion molecule
protein_id
: NP_033785.1
name
LOC100043430
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149267442
GeneID:100043430
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001480201.1
name
LOC667895
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667895
definition
number
: 1
pseudo
: _no_value
name
LOC667895
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667895
definition
number
: 2
pseudo
: _no_value
name
LOC667895
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667895
definition
number
: 3
pseudo
: _no_value
name
LOC627543
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149267553
GeneID:627543
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 9204 ESTs, 13 Proteins
product
: similar to eukaryotic translation elongation factor 1 alpha 1
pseudo
: _no_value
transcript_id
: XR_035012.1
clone name
MSMg01-517F19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-320K08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170F01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-312C14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-337E15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-456L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-411C10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304G09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-363M16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-440P06
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-359O04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-338G16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-148B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-385A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-441E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-500D05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362F06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-319A14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537F14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-365G14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-348J14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-072F08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-365A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-191P06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-191P08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-139H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-049J02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-436L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-505A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-051J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-120F08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-408K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-503C23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-340E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-402I17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-292J21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433L03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304I07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-332F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516N20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-467E07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-164N13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261A19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-307J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-457G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493A04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-305L09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-488E18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-056P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-501I14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-375C05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-442C23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-372A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-506I03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493M04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416H13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-279L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-279P23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-333L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-494K19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-162D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316J07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-069F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-526D12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-216P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-276H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-197J08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-446O17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516J09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-509A18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-495J17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-492K02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-279M06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-168M11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-453P09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-313J03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-159E01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-264N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-267M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-172L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-318C15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304O11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-178I18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-362E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-204B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461F14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-071L03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-074C15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-475P09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288D11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-323A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-538B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-465N06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-447O14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-217J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-453O06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-520A08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-337K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368J08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-268D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-076B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-080D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352A06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-317B15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351N12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-495J08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-302G08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-133A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-292I16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-153A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-508F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-437L13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-295I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506P10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-183K01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-344B10
singlet/doublet
doublet
plural/unique
plural
clone name
B6Ng01-347A20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-015L04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-134M23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-119D12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-350F10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-210E10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-210P05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-326I02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-049E20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-143F16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-302M06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-099P12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-084F23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-337P16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-303D23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-218O02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-266M20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-169M03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-323O11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-223L18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-105O17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-151M19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-185G05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-269B17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-080J20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-118D22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-171N08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-318C24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-024I12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-313F13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-015P15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-129G17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-339E11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-202B03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-225F01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-142D19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-231E03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-219I03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-161N02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-238M08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-078J03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-153L08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-338F16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-160G12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-144M05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-034M19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-017N03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-273H13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259N04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-203B14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-157P09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091E21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-300O06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-336E02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-021D19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-214O04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-058J23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-343K24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-003G15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-170F08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-346G05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-184I04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-267J06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-080I09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-093N12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-208B05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-040A05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-252A16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-125J23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-305L03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-252F04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-236P16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-243N06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-210M22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-004B04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-105D16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-123M12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-322B24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-115N15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-336G07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-284P02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-044K17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-150J06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-324H16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-003E15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-030J12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-266D01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-116J07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-127O19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-233G23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-319O11
singlet/doublet
doublet
plural/unique
unique